Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_O16
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo...    27   2.4  
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    26   4.2  
SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr 1...    26   5.5  
SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    25   7.3  
SPBC27.06c |mgr2||mitochondrial membrane protein Mgr1 |Schizosac...    25   9.6  

>SPBC13G1.08c |ash2||Ash2-trithorax family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
 Frame = +3

Query: 495 YADLDRPLERYPTP-----IVKDEPQTVPSAASTPPLSPIDMDTXEKIKL 629
           Y D  R ++R  TP     I K+E  TVP     PP    D +T  K+ +
Sbjct: 252 YKDSKREMKRSNTPWSNASIKKNEVPTVPIRYKPPPWRDSDFETVPKLPI 301


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 125 VFAPNASVSLNSLRELYNFFXRLTHVLLPVA 33
           + APN +  L   REL NFF  L  V +P +
Sbjct: 417 IIAPNYTRLLELDRELSNFFKELIEVNIPTS 447


>SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 588

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 438 EALXKLHHGEAVTPLGRXVYADLDRPLERYP 530
           EA   L+H E VT   +  +   DRP+  YP
Sbjct: 86  EATEALYHAEQVTEERKKHFEHHDRPIGSYP 116


>SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 594

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
 Frame = +3

Query: 156 TTFYDEQYPLSGPVENLKRPLTLDVGRGGKRSRIAAPVLSSPDLQMLKLGSPELEKLIIQ 335
           T   ++  P+ GP+  +  P   D     K + IAA ++S  +  +L L  P+L     +
Sbjct: 174 TNMANQPCPVPGPISAVISPEISDKESLEKATDIAAELISKKEKPIL-LAGPKLRAAGAE 232

Query: 336 NGMVXXXXXXXXXXVLFPAVAP--TEEQEMYA 425
           +  V           + PA     +EE + YA
Sbjct: 233 SAFVKLAEALNCAAFIMPAAKGFYSEEHKNYA 264


>SPBC27.06c |mgr2||mitochondrial membrane protein Mgr1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 120

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -2

Query: 568 LGTVWGSSFTMGVGYRSSGLSKSAYTXRPSG-VTASPWCSLXSASTKGRAYISCSSV 401
           +G + GS+  +G+G+   G++   Y   P G +       L SA+T G  ++S  SV
Sbjct: 14  MGAIMGSAAGLGIGFLFGGVAVLRYGPGPRGFLRTLGQYMLTSAATFG-FFMSIGSV 69


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,597,993
Number of Sequences: 5004
Number of extensions: 52293
Number of successful extensions: 172
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)