Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_F_O16
(656 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z54216-9|CAN86906.1| 155|Caenorhabditis elegans Hypothetical pr... 30 1.7
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil... 29 2.9
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical... 29 2.9
AL132862-27|CAB60564.1| 682|Caenorhabditis elegans Hypothetical... 29 3.8
AF016681-6|AAB66175.2| 317|Caenorhabditis elegans Hypothetical ... 29 3.8
Z82083-9|CAB04975.1| 635|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z81503-6|CAB04115.1| 635|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical pr... 28 5.1
Y12543-1|CAA73142.1| 897|Caenorhabditis elegans VPS34 homologue... 28 5.1
U97190-7|AAF23185.1| 650|Caenorhabditis elegans Related to yeas... 28 5.1
U97190-6|AAV58893.1| 716|Caenorhabditis elegans Related to yeas... 28 5.1
U97190-5|AAV34807.1| 897|Caenorhabditis elegans Related to yeas... 28 5.1
U97190-4|AAV58894.1| 720|Caenorhabditis elegans Related to yeas... 28 5.1
U97190-3|AAF23184.1| 901|Caenorhabditis elegans Related to yeas... 28 5.1
U29612-3|AAA68802.2| 289|Caenorhabditis elegans Hypothetical pr... 28 5.1
AF077542-6|AAC26298.1| 108|Caenorhabditis elegans Hypothetical ... 28 5.1
AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein. 28 5.1
U41015-1|AAA82317.2| 1396|Caenorhabditis elegans Multidrug resis... 28 6.7
AC006672-7|AAM98004.1| 668|Caenorhabditis elegans Hypothetical ... 27 8.9
>Z54216-9|CAN86906.1| 155|Caenorhabditis elegans Hypothetical
protein T24H10.7d protein.
Length = 155
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +3
Query: 585 PLSPIDMDTXEKIKLERKRQRNR 653
P++ + +D EK KLERKR RNR
Sbjct: 69 PINMMALDDQEKKKLERKRARNR 91
>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
ATPase protein.
Length = 2395
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +3
Query: 537 IVKDEPQTVPSAASTPPLSPIDMDTXEKIKLERKRQRNR 653
+ D+P T S+A PP SPI ++T E +E ++++ +
Sbjct: 22 VADDQPST--SSAVAPPPSPIAIETDEDAVVEEEKKKKK 58
>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
protein Y111B2A.22 protein.
Length = 2395
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +3
Query: 537 IVKDEPQTVPSAASTPPLSPIDMDTXEKIKLERKRQRNR 653
+ D+P T S+A PP SPI ++T E +E ++++ +
Sbjct: 22 VADDQPST--SSAVAPPPSPIAIETDEDAVVEEEKKKKK 58
>AL132862-27|CAB60564.1| 682|Caenorhabditis elegans Hypothetical
protein Y73F8A.35 protein.
Length = 682
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3
Query: 420 YARPFVEALXKLHHGEAVT 476
Y RPF AL + HHGE +T
Sbjct: 314 YMRPFQNALERPHHGEFIT 332
>AF016681-6|AAB66175.2| 317|Caenorhabditis elegans Hypothetical
protein F22E5.11 protein.
Length = 317
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = +3
Query: 465 EAVTPLGRXVYADLDRPLERYPTPIVKDEPQTVPSAASTPPLSPIDMDTXE 617
EA+ LGR L +E+ TP +P T S ++ PL P D E
Sbjct: 189 EAIARLGREPIPVLPSKIEKTATPPTIGDPVTSSSDSTESPLIPEQPDNNE 239
>Z82083-9|CAB04975.1| 635|Caenorhabditis elegans Hypothetical
protein ZK1010.9 protein.
Length = 635
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 180 PLSGPVENLKRPLTLDVGRGGKRSRI 257
P GPV+ K+P T+D GR R+++
Sbjct: 34 PTKGPVQPQKKPTTVDNGRRAYRNQV 59
>Z81503-6|CAB04115.1| 635|Caenorhabditis elegans Hypothetical
protein ZK1010.9 protein.
Length = 635
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 180 PLSGPVENLKRPLTLDVGRGGKRSRI 257
P GPV+ K+P T+D GR R+++
Sbjct: 34 PTKGPVQPQKKPTTVDNGRRAYRNQV 59
>Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical
protein C02B4.1 protein.
Length = 1461
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +2
Query: 137 FRPQHGDHLL*RAISSQRPCGKP*KAPNLGCWAGWETFTNRCTRS 271
FRP D + + +RPC N GCW W+ +++ C++S
Sbjct: 782 FRPCLTDQCSSKHLQEERPCD------NEGCWTNWDEWSS-CSQS 819
>Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical
protein C02B4.1 protein.
Length = 1461
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +2
Query: 137 FRPQHGDHLL*RAISSQRPCGKP*KAPNLGCWAGWETFTNRCTRS 271
FRP D + + +RPC N GCW W+ +++ C++S
Sbjct: 782 FRPCLTDQCSSKHLQEERPCD------NEGCWTNWDEWSS-CSQS 819
>Y12543-1|CAA73142.1| 897|Caenorhabditis elegans VPS34 homologue
protein.
Length = 897
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 513 PLERYPTPIVKDEPQTVPSAASTP 584
P E P P+V +E +PS A+TP
Sbjct: 429 PEEGNPVPVVSEEEGKIPSVATTP 452
>U97190-7|AAF23185.1| 650|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 34, isoform b
protein.
Length = 650
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 513 PLERYPTPIVKDEPQTVPSAASTP 584
P E P P+V +E +PS A+TP
Sbjct: 182 PEEGNPVPVVSEEEGKIPSVATTP 205
>U97190-6|AAV58893.1| 716|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 34, isoform d
protein.
Length = 716
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 513 PLERYPTPIVKDEPQTVPSAASTP 584
P E P P+V +E +PS A+TP
Sbjct: 429 PEEGNPVPVVSEEEGKIPSVATTP 452
>U97190-5|AAV34807.1| 897|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 34, isoform c
protein.
Length = 897
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 513 PLERYPTPIVKDEPQTVPSAASTP 584
P E P P+V +E +PS A+TP
Sbjct: 429 PEEGNPVPVVSEEEGKIPSVATTP 452
>U97190-4|AAV58894.1| 720|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 34, isoform e
protein.
Length = 720
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 513 PLERYPTPIVKDEPQTVPSAASTP 584
P E P P+V +E +PS A+TP
Sbjct: 433 PEEGNPVPVVSEEEGKIPSVATTP 456
>U97190-3|AAF23184.1| 901|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 34, isoform a
protein.
Length = 901
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 513 PLERYPTPIVKDEPQTVPSAASTP 584
P E P P+V +E +PS A+TP
Sbjct: 433 PEEGNPVPVVSEEEGKIPSVATTP 456
>U29612-3|AAA68802.2| 289|Caenorhabditis elegans Hypothetical
protein C09B8.4 protein.
Length = 289
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +2
Query: 371 SACLISRSSTYGGTRNV 421
S CL S SSTYGG RN+
Sbjct: 7 SHCLKSSSSTYGGIRNI 23
>AF077542-6|AAC26298.1| 108|Caenorhabditis elegans Hypothetical
protein Y57G7A.3a protein.
Length = 108
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 528 PTPIVKDEPQTVPSAASTPPLSPIDMDTXE 617
P PI K QT P+A + P +PI+ E
Sbjct: 51 PNPIKKSSTQTCPTAQTPPAKTPIERSRHE 80
>AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein.
Length = 1461
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +2
Query: 137 FRPQHGDHLL*RAISSQRPCGKP*KAPNLGCWAGWETFTNRCTRS 271
FRP D + + +RPC N GCW W+ +++ C++S
Sbjct: 782 FRPCLTDQCSSKHLQEERPCD------NEGCWTNWDEWSS-CSQS 819
>U41015-1|AAA82317.2| 1396|Caenorhabditis elegans Multidrug
resistance protein familyprotein 6 protein.
Length = 1396
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +3
Query: 516 LERYPTPIVKDEPQTVPSAASTPPLSPIDMDTXEKIKLERKRQR 647
L+ T + DE V S+PP SP+++++ EKI E QR
Sbjct: 703 LQAVETEVQSDE-LFVDGPPSSPPPSPVNIESMEKINKESIFQR 745
>AC006672-7|AAM98004.1| 668|Caenorhabditis elegans Hypothetical
protein K08D12.6 protein.
Length = 668
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 5/59 (8%)
Frame = +3
Query: 465 EAVTPLGRXVYADLDRPLERYPTPIVKDEPQTVP-----SAASTPPLSPIDMDTXEKIK 626
E VTP A D P+E+ P + P P SAA P +P D+ + K
Sbjct: 295 EQVTPAPAAAPAPADAPVEQAPVAVPAPAPAAAPAPDCGSAAPAPAAAPAATDSGYRSK 353
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = +3
Query: 465 EAVTPLGRXVYADLDRPLERYPTPIVKDEPQTVPSAASTPP 587
E VTP A D P+E+ P + P P+ A+ P
Sbjct: 490 EQVTPAPAAAPAPADAPVEQAPVAVPAPAPAAAPAPAAPAP 530
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,760,591
Number of Sequences: 27780
Number of extensions: 314065
Number of successful extensions: 933
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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