Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_O14
         (713 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0582 + 30124280-30124487,30124600-30124698,30125438-301255...    33   0.23 
01_06_1828 - 40174446-40174543,40175031-40175171,40176518-401767...    29   4.8  
05_05_0020 - 21560896-21561352,21563399-21563480,21564143-215642...    28   8.5  
01_05_0271 + 20276965-20278674                                         28   8.5  

>02_05_0582 +
           30124280-30124487,30124600-30124698,30125438-30125589,
           30125708-30125896,30126001-30126111,30126370-30126536,
           30127923-30128184
          Length = 395

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = +3

Query: 27  NTGRVNN*CIHPVGLHQLNKMATLNTILFV-FMILGAFVKAQRPFYAGLSPIGYP-AVET 200
           +TG  NN  +  VG +Q+ K+A   TI+   FMI    V +Q+     +   G   A  T
Sbjct: 211 STGLANNFPLFSVGFYQMAKIAVTPTIVVAEFMIFQKRVSSQKVITLAIVSFGVAVATVT 270

Query: 201 DLLSNRFG 224
           DL  N FG
Sbjct: 271 DLEFNFFG 278


>01_06_1828 -
           40174446-40174543,40175031-40175171,40176518-40176719,
           40176815-40176914,40177029-40177081,40177951-40178097,
           40178184-40178341,40178509-40178599,40179415-40179522,
           40179815-40179952,40180154-40180246,40180342-40180434,
           40180528-40180637,40181087-40181135,40181324-40181437,
           40181530-40181589,40181674-40181742,40182034-40182135,
           40182235-40182263,40182348-40182630,40183574-40183960
          Length = 874

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
 Frame = +2

Query: 5   RPMTVCIQHGSCKQLVHSPSRPSSAKQD--GNIKH-HTFRFYD 124
           R   +C +     QLVH P RP+ A+ D  G   H    RFYD
Sbjct: 78  RGSDICTRRPLVLQLVHQPRRPADAEADEWGEFLHLPGRRFYD 120


>05_05_0020 -
           21560896-21561352,21563399-21563480,21564143-21564263,
           21564424-21565074,21565206-21565338,21565677-21565728,
           21566115-21566244,21567241-21567300,21567444-21567536,
           21567795-21567919,21568263-21568353,21568828-21569127,
           21569415-21570038
          Length = 972

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +3

Query: 210 SNRFGEDEEAPIEVRGDG-NLINRLNSLPIENQPFWYLNWKAYEALRKRP 356
           S+R+ E     I V G G N +NR+    ++   FW +N   ++A+R  P
Sbjct: 110 SHRYSEPRIKVIGVGGGGSNAVNRMIESDMKGVEFWIVN-TDFQAMRMSP 158


>01_05_0271 + 20276965-20278674
          Length = 569

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 168 GQRKTVFGLLQTLPES*KRKVWCLMLPSC 82
           GQ K  +GL+QT+P      VW  +L  C
Sbjct: 472 GQLKEAYGLIQTMPAPADSGVWGALLWGC 500


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,150,346
Number of Sequences: 37544
Number of extensions: 365717
Number of successful extensions: 845
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)