Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_N24
         (834 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    23   3.0  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   9.1  
AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    21   9.1  

>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -2

Query: 554 PGPSKGNPSPWLPEAK*TCMSALP 483
           P PS  +P P LP A   C + LP
Sbjct: 153 PNPSIIDPGPALPPAGFLCNNYLP 176


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 49  ISLVQCXTIYLELNSPTLDE 108
           ++ VQC +I  E   PT DE
Sbjct: 77  VARVQCRSIKNECPEPTCDE 96


>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +1

Query: 7   SDTMLSSYILQILCISLVQCXTIY 78
           SDT     ++Q  C  +  C T+Y
Sbjct: 246 SDTYQGILVVQFFCSLVALCLTMY 269


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,949
Number of Sequences: 336
Number of extensions: 4717
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22932949
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)