Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_F_N24
(834 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0697 - 30999644-31000762 112 3e-25
06_01_0940 + 7235801-7236916 109 3e-24
10_08_0900 - 21436508-21437521 101 9e-22
10_08_0901 - 21443224-21444085,21444804-21444998,21445189-214452... 94 1e-19
02_01_0137 + 988442-988641,989088-989281,989369-989488,989594-98... 31 0.86
12_02_1061 - 25756366-25757567,25758692-25758797 29 3.5
12_02_0931 + 24512496-24512567,24512705-24512806,24512939-245129... 29 6.0
03_02_0018 - 5016752-5017288 29 6.0
10_08_0731 + 20161962-20163628,20163721-20163862,20164181-201644... 28 8.0
05_01_0160 + 1081416-1081647,1081840-1082012,1082169-1082246,108... 28 8.0
04_04_1242 - 32016553-32016857,32017628-32017784,32017871-320180... 28 8.0
12_02_0904 - 24181766-24181809,24181888-24182066,24182424-241824... 23 9.7
>02_05_0697 - 30999644-31000762
Length = 372
Score = 112 bits (270), Expect = 3e-25
Identities = 86/256 (33%), Positives = 115/256 (44%), Gaps = 22/256 (8%)
Frame = +1
Query: 112 NFLLQYGYLSKDLAGVGYTYT-SQSISEAVKKMQAFAGLPQTGVLDVPTKQLFKRKRCGL 288
++L +GYL + Y+ S+ A+ Q GL TG LD T RCG+
Sbjct: 67 DYLSHFGYLPPPPSSSPYSDAFDDSLEAAIAAYQRNFGLNATGELDTDTVDQMVAPRCGV 126
Query: 289 KDI-------DEDSHA---RNRR-YIIQEG---WN--KREVTYRLLNGSST-MSKDRIER 417
D+ D +S A R R Y G W +R + Y + S+T + + +
Sbjct: 127 ADVINGTSTMDRNSSAAALRGRHLYSYFPGGPMWPPFRRNLRYAITATSATSIDRATLSA 186
Query: 418 LLENGLEVWAPHGNLHFTKLDEGK-ADIQVYFASGNHGDGFPFDGPGRVVAHAFPPPLGD 594
+ WA L FT++ ADI + F SG+HGDG FDGP +AHAF P G
Sbjct: 187 VFARAFSRWAAATRLQFTEVSSASNADITIGFYSGDHGDGEAFDGPLGTLAHAFSPTDGR 246
Query: 595 IHFDDDETW-GVXXXXXXXXXXXXXXFFAVAVHEIGHSLGMSHSNVKSSVMYPYYXLPVD 771
H D E W +VAVHEIGH LG+ HS+V S+MYP
Sbjct: 247 FHLDAAEAWVASGDVSTSSSFGTAVDLESVAVHEIGHLLGLGHSSVPDSIMYPTIRTGTR 306
Query: 772 K--LHVDDILGMQXLY 813
K L DD+LG+Q LY
Sbjct: 307 KVDLESDDVLGIQSLY 322
>06_01_0940 + 7235801-7236916
Length = 371
Score = 109 bits (262), Expect = 3e-24
Identities = 81/257 (31%), Positives = 114/257 (44%), Gaps = 21/257 (8%)
Frame = +1
Query: 112 NFLLQYGYLS----KDLAGVGYTYTSQSISEAVKKMQAFAGLPQTGVLDVPTKQLFKRKR 279
++L +GYLS L+ + A+K Q GL TG LD T R
Sbjct: 67 DYLWHFGYLSYPSSSSLSPSFNDLFDADMELAIKMYQGNFGLDVTGDLDAATVSQMMAPR 126
Query: 280 CGLKDIDEDSHA-------RNRR-YIIQEG---WNKREVTYRL-LNGSSTMSKDR--IER 417
CG+ D+ + R R Y G W + T R + +S S DR + +
Sbjct: 127 CGVADVVNGTSTMGGGGGVRGRGLYSYFPGSPRWPRSRTTLRYAITATSQTSIDRATLSK 186
Query: 418 LLENGLEVWAPHGNLHFTKL-DEGKADIQVYFASGNHGDGFPFDGPGRVVAHAFPPPLGD 594
+ + W+ L+FT+ ADI + F G+HGDG FDGP +AHAF P G
Sbjct: 187 VFASAFARWSAATTLNFTEAASAADADITIGFYGGDHGDGEAFDGPLGTLAHAFSPTNGR 246
Query: 595 IHFDDDETWGVXXXXXXXXXXXXXXFFAVAVHEIGHSLGMSHSNVKSSVMYPYYXLPVDK 774
+H D E W +VAVHEIGH LG+ HS+ S+M+P K
Sbjct: 247 LHLDASEAWVAGGDVTRASSNAAVDLESVAVHEIGHILGLGHSSAADSIMFPTLTSRTKK 306
Query: 775 LHV--DDILGMQXLYLN 819
+++ DD+ G+Q LY N
Sbjct: 307 VNLATDDVAGIQGLYGN 323
>10_08_0900 - 21436508-21437521
Length = 337
Score = 101 bits (241), Expect = 9e-22
Identities = 80/257 (31%), Positives = 121/257 (47%), Gaps = 24/257 (9%)
Frame = +1
Query: 115 FLLQYGYLSKDLAGVGYTYTSQSISEAVKKMQAFAGLPQTGVLDVPTKQLFKRKRCGLKD 294
+L ++GY++K + + + AV++ Q LP TG LD T RCG+ D
Sbjct: 42 YLARFGYMAKPGRDTTDAF-DEHLEVAVRRYQTRFSLPVTGRLDNATLDQIMSPRCGVGD 100
Query: 295 IDED---SHARN--------RRYIIQEG---WNKRE----VTYRLLNGSST--MSKDRIE 414
D + S A + R+ +G W + + ++Y + ++ + +
Sbjct: 101 DDVERPVSVALSPGAQGGVVSRFTFFKGEPRWTRSDPPIVLSYAVSPTATVGYLPPAAVR 160
Query: 415 RLLENGLEVWAPHGNLHFTKLDEGKA-DIQVYFASGNHGDGFPFDGPGRVVAHAFPPPLG 591
+ + WA + F + D+ +A DI+V F +GNHGDG PFDGP ++ HAF P G
Sbjct: 161 AVFQRAFARWARTIPVGFVETDDYEAADIKVGFYAGNHGDGVPFDGPLGILGHAFSPKNG 220
Query: 592 DIHFDDDETWGVXXXXXXXXXXXXXXFFAVAVHEIGHSLGMSHSNVKSSVMYPYYXLPVD 771
+H D E W V +VA HEIGH LG+ HS +VMYP P +
Sbjct: 221 RLHLDASEHWAVDFDVDATASAIDLE--SVATHEIGHVLGLGHSASPRAVMYPSIK-PRE 277
Query: 772 K---LHVDDILGMQXLY 813
K L VDD+ G+Q LY
Sbjct: 278 KKVRLTVDDVEGVQALY 294
>10_08_0901 -
21443224-21444085,21444804-21444998,21445189-21445259,
21446293-21447094,21447687-21447723,21448270-21449023
Length = 906
Score = 93.9 bits (223), Expect = 1e-19
Identities = 53/112 (47%), Positives = 63/112 (56%), Gaps = 3/112 (2%)
Frame = +1
Query: 487 KADIQV-YFASGNHGDGFPFDGPGRVVAHAFPPPLGDIHFDDDETWGVXXXXXXXXXXXX 663
+ADI+V ++ +G HGDG PFDGP V AHA P G I FD E W V
Sbjct: 116 EADIRVGFYGAGEHGDGHPFDGPLNVYAHATGPEDGRIDFDAAERWAVDLAADASPAAVD 175
Query: 664 XXFFAVAVHEIGHSLGMSHSNVKSSVMYPYYXLPVDK--LHVDDILGMQXLY 813
VA HEIGH+LG+ HS +SSVMYPY K L VDD+ G+Q LY
Sbjct: 176 LE--TVATHEIGHALGLDHSTSESSVMYPYVGTRERKVRLTVDDVEGIQELY 225
Score = 66.5 bits (155), Expect = 2e-11
Identities = 56/169 (33%), Positives = 78/169 (46%), Gaps = 13/169 (7%)
Frame = +1
Query: 346 WNKREV--TYRL--LNGSSTMSKDRIERLLENGLEVWAPHGNLHFTKLDE-GKADIQVYF 510
WN+ ++ TY + L + + +D + + L WA L F + +ADI+V F
Sbjct: 679 WNRPDMRLTYAVSPLATADHLPRDAVREAFRSALARWAEVTPLRFAEAARYEEADIRVGF 738
Query: 511 ----ASGN-HGDGFPFDGPGR-VVAHAFPPPLGDIHFDDDETWGVXXXXXXXXXXXXXX- 669
A G G G G +AHA PP G IH W V
Sbjct: 739 YLHTADGKCDACGCVCKGGGEEALAHAHPPQDGRIHLHAARKWAVTNVAGAGGDAPPLAV 798
Query: 670 -FFAVAVHEIGHSLGMSHSNVKSSVMYPYYXLPVDKLHVDDILGMQXLY 813
+VAVHEIGH+LG+ HS+ +SS+MY +Y V L DD+ G+Q LY
Sbjct: 799 DLESVAVHEIGHALGLGHSSSESSMMYRHYRGKV-SLTDDDVKGVQELY 846
Score = 52.8 bits (121), Expect = 3e-07
Identities = 33/88 (37%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Frame = +1
Query: 559 VVAHA-FPPPLGDIHFDDDETWGVXXXXXXXXXXXXXXFFAVAVHEIGHSLGMSHSNVKS 735
V+AH+ P G IH W V +VA HEIGH LG+ HS+ +S
Sbjct: 400 VLAHSSMPEKSGQIHLHAAHRWTVNLAADTAPLAVDLE--SVAAHEIGHVLGLDHSSSRS 457
Query: 736 SVMYPYYXLPVDK--LHVDDILGMQXLY 813
S+MYP+ K L DD+ G+Q LY
Sbjct: 458 SMMYPFISCRERKVRLTTDDVHGIQELY 485
>02_01_0137 + 988442-988641,989088-989281,989369-989488,989594-989673,
990244-990510,990840-992458,992571-993327,993560-995506
Length = 1727
Score = 31.5 bits (68), Expect = 0.86
Identities = 32/126 (25%), Positives = 56/126 (44%)
Frame = +1
Query: 100 LDEVNFLLQYGYLSKDLAGVGYTYTSQSISEAVKKMQAFAGLPQTGVLDVPTKQLFKRKR 279
L + L+ + + +A VG + S+ E +QA AG G L +L +
Sbjct: 870 LINLRHLIDHEEVHSAIASVG---SLTSLQELTFNVQA-AGNFSIGQLS-SMNELVTLRI 924
Query: 280 CGLKDIDEDSHARNRRYIIQEGWNKREVTYRLLNGSSTMSKDRIERLLENGLEVWAPHGN 459
C L+++ + A++ R+I +E T+ N S S+ E+ ++ LE PH N
Sbjct: 925 CQLENVKSEEEAKSARFIDKEHLEALSFTW---NDLSMTSEPTAEKTTDDVLEGLEPHHN 981
Query: 460 LHFTKL 477
L +L
Sbjct: 982 LKHLQL 987
>12_02_1061 - 25756366-25757567,25758692-25758797
Length = 435
Score = 29.5 bits (63), Expect = 3.5
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +3
Query: 501 SLFRFRQPWRRVPLRWPWSSSGPRVSTAT 587
S+ RF P +P+R P ++ GP VSTA+
Sbjct: 396 SVLRFEAPLPSLPVRMPVATYGPPVSTAS 424
>12_02_0931 +
24512496-24512567,24512705-24512806,24512939-24512984,
24513292-24513355,24513997-24514348,24514497-24514749,
24515069-24515311,24515399-24515518,24515710-24516158
Length = 566
Score = 28.7 bits (61), Expect = 6.0
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +1
Query: 310 HARNR--RYIIQEGWNKREVTYRLLNGSSTMSKDRIERLLENGLEVWAPHGNLHF 468
H RN + +++EG N + S KD IE LENG+ W + +H+
Sbjct: 107 HGRNLFLQSLVEEGQNPSTSNGGSNSQKSVEYKDLIE-CLENGINFWTDYSKVHY 160
>03_02_0018 - 5016752-5017288
Length = 178
Score = 28.7 bits (61), Expect = 6.0
Identities = 25/72 (34%), Positives = 29/72 (40%), Gaps = 7/72 (9%)
Frame = -3
Query: 595 YRRVAVETRGPLLDQGHRRGTRLHGCRKRNKLVCPLCLHLVS-------*SGGSRGAPIP 437
YRR+ GP LD+ R G + R +L L L L S GG GA
Sbjct: 103 YRRLYRLCLGPALDRLGRGGGAIAHAHARARLSLSLSLSLFSIDCYERLGGGGGAGAGRQ 162
Query: 436 PNHSLEAFLCDP 401
P S FLC P
Sbjct: 163 PQPSSLLFLCKP 174
>10_08_0731 +
20161962-20163628,20163721-20163862,20164181-20164490,
20164566-20166466,20166557-20166650,20166953-20167440,
20167919-20168599,20168870-20168944,20170148-20170210,
20170588-20170633,20171373-20171420,20171484-20171557
Length = 1862
Score = 28.3 bits (60), Expect = 8.0
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = -1
Query: 102 KRRGV*LQINGXTLHQTDAQNLKYVTGKH 16
K +GV ++ G +LHQ +A ++++ KH
Sbjct: 699 KNQGVLTEVEGGSLHQAEAADIEHSENKH 727
>05_01_0160 +
1081416-1081647,1081840-1082012,1082169-1082246,
1082372-1082529,1082558-1082709,1083232-1083290,
1083633-1083912,1084235-1084470,1084601-1084744,
1084845-1085012
Length = 559
Score = 28.3 bits (60), Expect = 8.0
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -3
Query: 463 GGSRGAPIPPNHSLEAFLCDPCSLYLNHSGVCK 365
GGS+GA PP + + CD CS+ + G+ +
Sbjct: 96 GGSKGAA-PPARDIRRYKCDFCSVVRSKKGLIR 127
>04_04_1242 - 32016553-32016857,32017628-32017784,32017871-32018089,
32018184-32018470,32018629-32019934,32020021-32020178,
32020250-32020335,32023106-32023173,32023297-32023340,
32023418-32023490,32023605-32023684,32023774-32023867,
32023981-32024151,32024463-32024557,32025049-32025128,
32025137-32025333,32025896-32026183
Length = 1235
Score = 28.3 bits (60), Expect = 8.0
Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = +3
Query: 405 SHRKASRE-WFGGMGAPREPPLHET 476
S RK SR+ FG +G PR P LH T
Sbjct: 1144 SPRKLSRQNSFGSIGTPRTPNLHST 1168
>12_02_0904 -
24181766-24181809,24181888-24182066,24182424-24182464,
24182829-24182860,24183816-24184140
Length = 206
Score = 23.4 bits (48), Expect(2) = 9.7
Identities = 10/38 (26%), Positives = 20/38 (52%)
Frame = -3
Query: 394 LYLNHSGVCK*PRVYSILLV*YICDFLRASLHLYLSNR 281
+YL G+C + + +V +C F+ + Y+SN+
Sbjct: 142 IYLLDKGICMTNPPHLLTVVKKVCSFITWDGYQYMSNQ 179
Score = 23.0 bits (47), Expect(2) = 9.7
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -3
Query: 544 RRGTRLHGCRKRNKLVCPLC 485
RRG LHG R+R+ P C
Sbjct: 83 RRGGALHGVRRRDGGEAPGC 102
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,052,190
Number of Sequences: 37544
Number of extensions: 511148
Number of successful extensions: 1380
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1370
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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