Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_F_N19
(515 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0159 + 27089006-27089064,27089925-27090007,27090414-270905... 46 2e-05
12_01_0987 - 10016203-10017165,10017346-10018180,10019532-10020379 30 0.96
12_01_0971 - 9781887-9781924,9782036-9782247,9782327-9784114,978... 29 1.7
11_03_0025 + 9047646-9047958,9048150-9048474,9049833-9051828,905... 29 2.2
11_06_0062 + 19709801-19710832,19712383-19712568,19712661-197128... 27 6.8
07_03_0534 - 19189986-19190126,19191058-19191212,19191643-191919... 27 6.8
02_05_0924 - 32749682-32750200,32750756-32750959,32751062-327511... 27 6.8
02_02_0479 - 10775382-10775656,10776513-10777535,10777725-107784... 27 6.8
04_04_0070 - 22509546-22509686,22509799-22509953,22510167-22510260 27 8.9
>01_06_0159 +
27089006-27089064,27089925-27090007,27090414-27090588,
27091442-27091592,27091629-27091752,27092378-27092446,
27093197-27093291
Length = 251
Score = 46.0 bits (104), Expect = 2e-05
Identities = 24/82 (29%), Positives = 49/82 (59%), Gaps = 4/82 (4%)
Frame = +2
Query: 74 LKPLLE-SGWKIQSNRDAIE--KEFQFKNFNEAFGFMTRVALLAEKMDHHPEWFNV-YNK 241
+K L++ GW++ + D ++ + ++ KNF + F+ VA +AE+ HHP+ V +N
Sbjct: 151 VKSLIKVGGWELATEGDILKLHRAWKVKNFVKGLEFLQLVAAVAEEEGHHPDLHLVGWNN 210
Query: 242 LQVTLSSHDVNGLSKRDIKMAS 307
+++ + +H V GL+ D +A+
Sbjct: 211 VKIDVWTHSVRGLTDNDFILAA 232
>12_01_0987 - 10016203-10017165,10017346-10018180,10019532-10020379
Length = 881
Score = 30.3 bits (65), Expect = 0.96
Identities = 24/92 (26%), Positives = 38/92 (41%)
Frame = +2
Query: 53 QEERTTELKPLLESGWKIQSNRDAIEKEFQFKNFNEAFGFMTRVALLAEKMDHHPEWFNV 232
Q+ + LK L S ++ + + K + +LLA K D +W V
Sbjct: 343 QDSKKLFLKRLFHSDSNFPTHLEEVSHAIIKKCHGFPLAIICLASLLASKSDTKDQWEQV 402
Query: 233 YNKLQVTLSSHDVNGLSKRDIKMASFMDKNYN 328
+N L SS G+S DI + S+ D Y+
Sbjct: 403 HNSLSSAFSS---QGMS--DILLLSYYDLPYH 429
>12_01_0971 -
9781887-9781924,9782036-9782247,9782327-9784114,
9784630-9785432
Length = 946
Score = 29.5 bits (63), Expect = 1.7
Identities = 19/47 (40%), Positives = 26/47 (55%)
Frame = +2
Query: 185 ALLAEKMDHHPEWFNVYNKLQVTLSSHDVNGLSKRDIKMASFMDKNY 325
+LL+ K D +W V+N + VTL+S DV R I M S+ D Y
Sbjct: 373 SLLSIKPDTEDQWMQVHNSIGVTLNS-DV---EVRKILMLSYYDLPY 415
>11_03_0025 +
9047646-9047958,9048150-9048474,9049833-9051828,
9051991-9052190,9052851-9052899
Length = 960
Score = 29.1 bits (62), Expect = 2.2
Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 1/90 (1%)
Frame = +2
Query: 50 NQEERTTELKPLLESGWKIQSNRDAIEKEFQFKNFNEAFGFMTRVALLAEKMDHHPEWFN 229
+Q+ +K + SG + + + K + LLA K D EW
Sbjct: 272 HQDSSKLFVKKIFPSGCGVPQHLKEVSNAILKKCGGLPLAILIIAGLLASKYDRKDEWEA 331
Query: 230 VYNKLQVTL-SSHDVNGLSKRDIKMASFMD 316
V+N + L +H + G R I M SF D
Sbjct: 332 VHNSIGSELGKNHTLEGF--RRILMLSFYD 359
>11_06_0062 +
19709801-19710832,19712383-19712568,19712661-19712867,
19712940-19713078,19713172-19713380,19713520-19714134
Length = 795
Score = 27.5 bits (58), Expect = 6.8
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +2
Query: 23 SKRKMADQLNQ-EERTTELKPLLESGWKIQSNRDAIEKEFQFK 148
SK ++ D E+ T L L+E+G+ +QS + + K QFK
Sbjct: 654 SKLRITDSTKIFEKHNTTLNYLVENGFNVQSLQCKLNKALQFK 696
>07_03_0534 -
19189986-19190126,19191058-19191212,19191643-19191928,
19192641-19192892,19193839-19193877
Length = 290
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +2
Query: 59 ERTTELKPLLESG-WKIQSNRDAIEKEFQFKNFNEAFGFMTRVALLAEKMD 208
+ T+ L G WK+ SN++A+++ FK+ A +T A+ + D
Sbjct: 229 DENTDFLILASDGLWKVMSNQEAVDEIKDFKDAQAAAKHLTEQAVNRKSKD 279
>02_05_0924 -
32749682-32750200,32750756-32750959,32751062-32751109,
32751769-32751819,32751907-32752032,32752117-32752257,
32752750-32752971,32753160-32753312,32753536-32753718,
32753964-32754110,32754212-32754319,32754426-32754530,
32754824-32754928,32755243-32755310,32755498-32755576,
32755876-32755935,32756023-32756076,32756168-32756233,
32756701-32756753,32757042-32757096,32757645-32757787,
32758236-32758333,32758436-32758716
Length = 1022
Score = 27.5 bits (58), Expect = 6.8
Identities = 10/17 (58%), Positives = 16/17 (94%)
Frame = +1
Query: 88 GIWLENSKQQRRNRKGI 138
G+ LE+SK++++NRKGI
Sbjct: 563 GMTLEDSKEEKKNRKGI 579
>02_02_0479 -
10775382-10775656,10776513-10777535,10777725-10778461,
10779008-10779155,10779331-10779856
Length = 902
Score = 27.5 bits (58), Expect = 6.8
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +2
Query: 173 MTRVALLAEKMDHHPEWFNVYNKLQVTL-SSHDVNGLSK 286
+T +LLA K + EW+ VYN + L +S DV + K
Sbjct: 324 ITMASLLACKARNKMEWYKVYNSVGTGLENSLDVKNMRK 362
>04_04_0070 - 22509546-22509686,22509799-22509953,22510167-22510260
Length = 129
Score = 27.1 bits (57), Expect = 8.9
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +2
Query: 65 TTELKPLLESG-WKIQSNRDAIEKEFQFKNFNEAFGFMTRVALLAEKMD 208
T EL L G WK+ +N++ ++ +FK+ A +T AL + D
Sbjct: 70 TAELLVLASDGLWKVMNNQEVVDVAKRFKDPQAAAKQLTAEALKRDSKD 118
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,790,246
Number of Sequences: 37544
Number of extensions: 185863
Number of successful extensions: 412
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 412
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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