Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_F_N14
(721 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z66567-5|CAA91492.4| 757|Caenorhabditis elegans Hypothetical pr... 48 9e-06
Z66567-7|CAC42386.3| 414|Caenorhabditis elegans Hypothetical pr... 44 1e-04
AF199013-1|AAG28557.1| 414|Caenorhabditis elegans organic catio... 44 1e-04
U00031-5|AAP68960.1| 534|Caenorhabditis elegans Hypothetical pr... 43 2e-04
Z92775-4|CAB07163.4| 501|Caenorhabditis elegans Hypothetical pr... 38 0.010
AL132895-5|CAC35863.3| 501|Caenorhabditis elegans Hypothetical ... 38 0.010
U29377-2|AAA68713.4| 627|Caenorhabditis elegans Hypothetical pr... 37 0.017
U29377-1|AAZ94294.1| 773|Caenorhabditis elegans Hypothetical pr... 37 0.017
U80931-7|AAB38003.2| 526|Caenorhabditis elegans Organic anion t... 36 0.029
AF152095-1|AAF73198.1| 526|Caenorhabditis elegans multispecific... 36 0.029
Z74038-8|CAD21642.1| 540|Caenorhabditis elegans Hypothetical pr... 34 0.089
Z72507-16|CAC35887.1| 540|Caenorhabditis elegans Hypothetical p... 34 0.089
U25032-1|AAB18670.1| 1379|Caenorhabditis elegans par-3 protein. 34 0.12
U00067-5|ABD63219.1| 1340|Caenorhabditis elegans Abnormal embryo... 34 0.12
U00067-4|AAK73874.1| 1376|Caenorhabditis elegans Abnormal embryo... 34 0.12
U00067-3|AAK73875.1| 1379|Caenorhabditis elegans Abnormal embryo... 34 0.12
U37429-5|AAA79347.1| 311|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z70757-4|CAA94800.1| 1208|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z71185-3|CAA94905.2| 427|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z70684-3|CAA94598.1| 233|Caenorhabditis elegans Hypothetical pr... 29 4.4
AL132943-8|CAB81985.3| 453|Caenorhabditis elegans Hypothetical ... 29 4.4
AL132943-7|CAC14394.1| 589|Caenorhabditis elegans Hypothetical ... 29 4.4
AF031834-1|AAC13670.1| 589|Caenorhabditis elegans GLY4 protein. 29 4.4
U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protei... 28 5.8
AF038608-17|AAC25822.2| 425|Caenorhabditis elegans Hypothetical... 28 5.8
AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen prot... 28 5.8
Z82257-1|CAB05120.2| 1043|Caenorhabditis elegans Hypothetical pr... 28 7.7
U70855-2|AAB09162.2| 447|Caenorhabditis elegans Tyrosinyl trna ... 28 7.7
AJ271057-1|CAB65957.1| 1043|Caenorhabditis elegans Ack related n... 28 7.7
>Z66567-5|CAA91492.4| 757|Caenorhabditis elegans Hypothetical
protein ZK455.8a protein.
Length = 757
Score = 47.6 bits (108), Expect = 9e-06
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Frame = +2
Query: 452 CDSWVYER---DHTIVAEFDLACEE-WKRTLVGTIHSAGVFMALPITAFISDNYGRRTAL 619
C W Y+ D TIV E++ C+ W R V +S G + + FISD YGR+TA+
Sbjct: 279 CKEWEYDTSVMDRTIVTEWNRVCDNNWSRAHVHMSYSLGYLVGCFVGGFISDRYGRKTAI 338
Query: 620 IMTXXXXXXXXXXXXFSNSYVLYVXLEFVEA 712
+S + +++ + F+ A
Sbjct: 339 TGFGILTMLFGFLLTYSKEFEIFLVVRFLLA 369
>Z66567-7|CAC42386.3| 414|Caenorhabditis elegans Hypothetical
protein ZK455.8b protein.
Length = 414
Score = 43.6 bits (98), Expect = 1e-04
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Frame = +2
Query: 476 DHTIVAEFDLACEE-WKRTLVGTIHSAGVFMALPITAFISDNYGRRTALIMTXXXXXXXX 652
D TIV E++ C+ W R V +S G + + FISD YGR+TA+
Sbjct: 2 DRTIVTEWNRVCDNNWSRAHVHMSYSLGYLVGCFVGGFISDRYGRKTAITGFGILTMLFG 61
Query: 653 XXXXFSNSYVLYVXLEFVEA 712
+S + +++ + F+ A
Sbjct: 62 FLLTYSKEFEIFLVVRFLLA 81
>AF199013-1|AAG28557.1| 414|Caenorhabditis elegans organic cation
transporter protein.
Length = 414
Score = 43.6 bits (98), Expect = 1e-04
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Frame = +2
Query: 476 DHTIVAEFDLACEE-WKRTLVGTIHSAGVFMALPITAFISDNYGRRTALIMTXXXXXXXX 652
D TIV E++ C+ W R V +S G + + FISD YGR+TA+
Sbjct: 2 DRTIVTEWNRVCDNNWSRAHVHMSYSLGYLVGCFVGGFISDRYGRKTAITGFGILTMLFG 61
Query: 653 XXXXFSNSYVLYVXLEFVEA 712
+S + +++ + F+ A
Sbjct: 62 FLLTYSKEFEIFLVVRFLLA 81
>U00031-5|AAP68960.1| 534|Caenorhabditis elegans Hypothetical
protein B0361.11 protein.
Length = 534
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Frame = +2
Query: 485 IVAEFDLACEEWKRTLVG-TIHSAGVFMALPITAFISDNYGRRTALIMTXXXXXXXXXXX 661
++ +FDL+C W G TI + G +A+P + ++D YGR+ ++ T
Sbjct: 132 LLVDFDLSCSHWFFQEFGLTIFTIGAVIAVPFMSMLADRYGRKPIIVTTAILAFLANMAA 191
Query: 662 XFSNSYVLYVXL 697
FS ++ +++ L
Sbjct: 192 SFSPNFAIFLIL 203
>Z92775-4|CAB07163.4| 501|Caenorhabditis elegans Hypothetical
protein C06H5.6 protein.
Length = 501
Score = 37.5 bits (83), Expect = 0.010
Identities = 40/196 (20%), Positives = 74/196 (37%), Gaps = 1/196 (0%)
Frame = +2
Query: 122 TMSRSTRSNELDMDAVWGELGQFGRYQVTXXXXXXXXXXXXXXXXXQYIFATGAVQYRCK 301
+MS + LD D V G++GRYQ+ F T +V++ C
Sbjct: 15 SMSATFNYLHLDADKVLTAFGKYGRYQMLAYVITTSVHMLFALNMMIMPFITKSVEFLCD 74
Query: 302 VPECEVSPPEFDTDFWGVWALPESGGRCDRLRPVGGGCGPGSFHANETLTCDSWVYERDH 481
+P+ P D+ + P G C L+ N +++ ++
Sbjct: 75 LPD----PESIDSAHFS----PLVGDSC-HLQDTQLNITIDCLAVNGASY--NYLADKKS 123
Query: 482 TIVAEFDLACE-EWKRTLVGTIHSAGVFMALPITAFISDNYGRRTALIMTXXXXXXXXXX 658
TI ++FDL CE + +I G + P + +SD GRR ++
Sbjct: 124 TITSDFDLVCEYQGMAEHATSIFLVGGMIVSPFVSQLSDILGRRPLFLIPLYISVAANLI 183
Query: 659 XXFSNSYVLYVXLEFV 706
+ +Y++++ F+
Sbjct: 184 CAAAPNYLIFLLFRFI 199
>AL132895-5|CAC35863.3| 501|Caenorhabditis elegans Hypothetical
protein C06H5.6 protein.
Length = 501
Score = 37.5 bits (83), Expect = 0.010
Identities = 40/196 (20%), Positives = 74/196 (37%), Gaps = 1/196 (0%)
Frame = +2
Query: 122 TMSRSTRSNELDMDAVWGELGQFGRYQVTXXXXXXXXXXXXXXXXXQYIFATGAVQYRCK 301
+MS + LD D V G++GRYQ+ F T +V++ C
Sbjct: 15 SMSATFNYLHLDADKVLTAFGKYGRYQMLAYVITTSVHMLFALNMMIMPFITKSVEFLCD 74
Query: 302 VPECEVSPPEFDTDFWGVWALPESGGRCDRLRPVGGGCGPGSFHANETLTCDSWVYERDH 481
+P+ P D+ + P G C L+ N +++ ++
Sbjct: 75 LPD----PESIDSAHFS----PLVGDSC-HLQDTQLNITIDCLAVNGASY--NYLADKKS 123
Query: 482 TIVAEFDLACE-EWKRTLVGTIHSAGVFMALPITAFISDNYGRRTALIMTXXXXXXXXXX 658
TI ++FDL CE + +I G + P + +SD GRR ++
Sbjct: 124 TITSDFDLVCEYQGMAEHATSIFLVGGMIVSPFVSQLSDILGRRPLFLIPLYISVAANLI 183
Query: 659 XXFSNSYVLYVXLEFV 706
+ +Y++++ F+
Sbjct: 184 CAAAPNYLIFLLFRFI 199
>U29377-2|AAA68713.4| 627|Caenorhabditis elegans Hypothetical
protein K05F1.6b protein.
Length = 627
Score = 36.7 bits (81), Expect = 0.017
Identities = 20/91 (21%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Frame = +2
Query: 452 CDSWVYERD---HTIVAEFDLACEEW-KRTLVGTIHSAGVFMALPITAFISDNYGRRTAL 619
C ++ +E+D TIV +F+L C+ W + +S G + + SD GR+ +
Sbjct: 99 CQAYHFEKDVMVETIVTDFNLVCDSWFAKGHAHMFYSIGYLLGCVLGGIASDKIGRKPTI 158
Query: 620 IMTXXXXXXXXXXXXFSNSYVLYVXLEFVEA 712
I F++ Y +++ + + A
Sbjct: 159 IGFGILSSMLGVFLPFNDYYPMFLLIRLLSA 189
>U29377-1|AAZ94294.1| 773|Caenorhabditis elegans Hypothetical
protein K05F1.6a protein.
Length = 773
Score = 36.7 bits (81), Expect = 0.017
Identities = 20/91 (21%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Frame = +2
Query: 452 CDSWVYERD---HTIVAEFDLACEEW-KRTLVGTIHSAGVFMALPITAFISDNYGRRTAL 619
C ++ +E+D TIV +F+L C+ W + +S G + + SD GR+ +
Sbjct: 245 CQAYHFEKDVMVETIVTDFNLVCDSWFAKGHAHMFYSIGYLLGCVLGGIASDKIGRKPTI 304
Query: 620 IMTXXXXXXXXXXXXFSNSYVLYVXLEFVEA 712
I F++ Y +++ + + A
Sbjct: 305 IGFGILSSMLGVFLPFNDYYPMFLLIRLLSA 335
>U80931-7|AAB38003.2| 526|Caenorhabditis elegans Organic anion
transporter protein 1 protein.
Length = 526
Score = 35.9 bits (79), Expect = 0.029
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +2
Query: 482 TIVAEFDLACEEWKRTL-VGTIHSAGVFMALPITAFISDNYGRRTALIMT 628
++ EF+ C++ K+ TI + GV + I +SDN+GRR ALI++
Sbjct: 110 SVQVEFNYICDDAKKVKNTITIQTFGVLVGAAIFGQVSDNFGRRKALIIS 159
>AF152095-1|AAF73198.1| 526|Caenorhabditis elegans multispecific
organic anion transporterprotein.
Length = 526
Score = 35.9 bits (79), Expect = 0.029
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +2
Query: 482 TIVAEFDLACEEWKRTL-VGTIHSAGVFMALPITAFISDNYGRRTALIMT 628
++ EF+ C++ K+ TI + GV + I +SDN+GRR ALI++
Sbjct: 110 SVQVEFNYICDDAKKVKNTITIQTFGVLVGAAIFGQVSDNFGRRKALIIS 159
>Z74038-8|CAD21642.1| 540|Caenorhabditis elegans Hypothetical
protein F17C11.12 protein.
Length = 540
Score = 34.3 bits (75), Expect = 0.089
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +2
Query: 467 YERD-HTIVAEFDLACEEWKRTLVGT-IHSAGVFMALPITAFISDNYGRRTALI 622
+ER + I +F L CE+ K +GT I GV + + I D YGR+T ++
Sbjct: 102 FERQFYGITEQFKLLCEDAKLEKLGTSIQMLGVMLGCVVFGQIGDQYGRKTPMM 155
>Z72507-16|CAC35887.1| 540|Caenorhabditis elegans Hypothetical
protein F17C11.12 protein.
Length = 540
Score = 34.3 bits (75), Expect = 0.089
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +2
Query: 467 YERD-HTIVAEFDLACEEWKRTLVGT-IHSAGVFMALPITAFISDNYGRRTALI 622
+ER + I +F L CE+ K +GT I GV + + I D YGR+T ++
Sbjct: 102 FERQFYGITEQFKLLCEDAKLEKLGTSIQMLGVMLGCVVFGQIGDQYGRKTPMM 155
>U25032-1|AAB18670.1| 1379|Caenorhabditis elegans par-3 protein.
Length = 1379
Score = 33.9 bits (74), Expect = 0.12
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -2
Query: 411 PPPTGRSRSHRPPDSGRAQTPQKSVSNSGGDTSHS 307
P P+ R SH PDS + S+SG D+SHS
Sbjct: 778 PSPSSRMSSHTAPDSLLPSPATRGTSSSGADSSHS 812
>U00067-5|ABD63219.1| 1340|Caenorhabditis elegans Abnormal embryonic
partitioningof cytoplasm protein 3, isoform c protein.
Length = 1340
Score = 33.9 bits (74), Expect = 0.12
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -2
Query: 411 PPPTGRSRSHRPPDSGRAQTPQKSVSNSGGDTSHS 307
P P+ R SH PDS + S+SG D+SHS
Sbjct: 742 PSPSSRMSSHTAPDSLLPSPATRGTSSSGADSSHS 776
>U00067-4|AAK73874.1| 1376|Caenorhabditis elegans Abnormal embryonic
partitioningof cytoplasm protein 3, isoform a protein.
Length = 1376
Score = 33.9 bits (74), Expect = 0.12
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -2
Query: 411 PPPTGRSRSHRPPDSGRAQTPQKSVSNSGGDTSHS 307
P P+ R SH PDS + S+SG D+SHS
Sbjct: 778 PSPSSRMSSHTAPDSLLPSPATRGTSSSGADSSHS 812
>U00067-3|AAK73875.1| 1379|Caenorhabditis elegans Abnormal embryonic
partitioningof cytoplasm protein 3, isoform b protein.
Length = 1379
Score = 33.9 bits (74), Expect = 0.12
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -2
Query: 411 PPPTGRSRSHRPPDSGRAQTPQKSVSNSGGDTSHS 307
P P+ R SH PDS + S+SG D+SHS
Sbjct: 778 PSPSSRMSSHTAPDSLLPSPATRGTSSSGADSSHS 812
>U37429-5|AAA79347.1| 311|Caenorhabditis elegans Hypothetical
protein F09E5.7 protein.
Length = 311
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -1
Query: 499 ELGNNSMISLINPGVACQGLVCMKAAWATATANRSEPV 386
+ GN ++ + I G G+ C KA + TA R+EPV
Sbjct: 168 DFGNETVQNTITTGRKFYGMYCQKANESRTTARRNEPV 205
>Z70757-4|CAA94800.1| 1208|Caenorhabditis elegans Hypothetical
protein ZK287.4 protein.
Length = 1208
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -2
Query: 420 GPQPPPTGRSRSHRPPDSGRAQTPQKSVSNSGGDTS 313
GP PPP+ S + PDS ++ T + SNSG S
Sbjct: 575 GPIPPPSNSGSSSQAPDSSQSAT---NSSNSGSGES 607
>Z71185-3|CAA94905.2| 427|Caenorhabditis elegans Hypothetical
protein C35A5.4 protein.
Length = 427
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 472 ERSYYCCRVRSSLRGVEEDFGRNHPQRWCFHG 567
ERSY R+ G+EE G P+++ HG
Sbjct: 178 ERSYEKLRIMLKYTGIEEKSGDGRPKQFILHG 209
>Z70684-3|CAA94598.1| 233|Caenorhabditis elegans Hypothetical
protein F28D1.3 protein.
Length = 233
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -3
Query: 332 ILAVTLHILVLYIYTVLHRSRKYTALNKCPKTVW 231
++ +TL +L+L + +RK T NKCP T+W
Sbjct: 3 LIKLTLAVLLLALGA---EARKITIYNKCPFTIW 33
>AL132943-8|CAB81985.3| 453|Caenorhabditis elegans Hypothetical
protein Y116F11B.12b protein.
Length = 453
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/62 (24%), Positives = 31/62 (50%)
Frame = +3
Query: 156 IWTRCGGSWDSSVATKLRYIFRY*YPYCFRAFI*GSIFSRPVQYSIDVKYQNVKCHRQNS 335
+W +CGGS + +++ ++FR +PY F G++F + + + +V K +
Sbjct: 357 VW-QCGGSLEIMPCSRVGHVFRKKHPYTFPGGS-GNVFQKNTRRAAEVWMDEYKAIYLKN 414
Query: 336 TP 341
P
Sbjct: 415 VP 416
>AL132943-7|CAC14394.1| 589|Caenorhabditis elegans Hypothetical
protein Y116F11B.12a protein.
Length = 589
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/62 (24%), Positives = 31/62 (50%)
Frame = +3
Query: 156 IWTRCGGSWDSSVATKLRYIFRY*YPYCFRAFI*GSIFSRPVQYSIDVKYQNVKCHRQNS 335
+W +CGGS + +++ ++FR +PY F G++F + + + +V K +
Sbjct: 357 VW-QCGGSLEIMPCSRVGHVFRKKHPYTFPGGS-GNVFQKNTRRAAEVWMDEYKAIYLKN 414
Query: 336 TP 341
P
Sbjct: 415 VP 416
>AF031834-1|AAC13670.1| 589|Caenorhabditis elegans GLY4 protein.
Length = 589
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/62 (24%), Positives = 31/62 (50%)
Frame = +3
Query: 156 IWTRCGGSWDSSVATKLRYIFRY*YPYCFRAFI*GSIFSRPVQYSIDVKYQNVKCHRQNS 335
+W +CGGS + +++ ++FR +PY F G++F + + + +V K +
Sbjct: 357 VW-QCGGSLEIMPCSRVGHVFRKKHPYTFPGGS-GNVFQKNTRRAAEVWMDEYKAIYLKN 414
Query: 336 TP 341
P
Sbjct: 415 VP 416
>U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protein
43 protein.
Length = 303
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -2
Query: 426 LPGPQPPPTGRSRSHRPPDSGRAQTPQKSVSNSGGDTSHSG 304
LPGP+ PP + +P G A TP +S + G +G
Sbjct: 186 LPGPRGPPGPPGEAGQPGPQGDAGTPAQSEPLTPGAPGEAG 226
>AF038608-17|AAC25822.2| 425|Caenorhabditis elegans Hypothetical
protein C09G12.9 protein.
Length = 425
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = -2
Query: 420 GPQPPPTGRSRSHRPPDSGRAQTPQKSVSNSGGDTSHSGTL 298
G P P+ S PP T Q SVS+S G T + T+
Sbjct: 224 GASPYPSASSNPAPPPPRPPPVTAQTSVSSSSGGTIQADTI 264
>AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen
protein.
Length = 303
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -2
Query: 426 LPGPQPPPTGRSRSHRPPDSGRAQTPQKSVSNSGGDTSHSG 304
LPGP+ PP + +P G A TP +S + G +G
Sbjct: 186 LPGPRGPPGPPGEAGQPGPQGDAGTPAQSEPLTPGAPGEAG 226
>Z82257-1|CAB05120.2| 1043|Caenorhabditis elegans Hypothetical
protein C01C7.1 protein.
Length = 1043
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -2
Query: 408 PPTGRSRSHRPPDSGRAQTPQKSVSNSGGDTSHSGTLH 295
PP R+ S +PP + + P +SVS+ HS +H
Sbjct: 582 PPVARAPS-QPPSYSQPRPPPRSVSSVSSGNQHSVQVH 618
>U70855-2|AAB09162.2| 447|Caenorhabditis elegans Tyrosinyl trna
synthetase protein1, isoform a protein.
Length = 447
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = -1
Query: 253 INARKQYGYQYRKIYRNLVATELSQLPPHRVHIQFITTSRTRH 125
+NARKQ + Y + + +L QLPP+ V+ F T+ + H
Sbjct: 30 LNARKQLQHSYPTDLLSKCSEDLRQLPPY-VYAGFDPTAESLH 71
>AJ271057-1|CAB65957.1| 1043|Caenorhabditis elegans Ack related
non-receptor tyrosinekinase protein.
Length = 1043
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -2
Query: 408 PPTGRSRSHRPPDSGRAQTPQKSVSNSGGDTSHSGTLH 295
PP R+ S +PP + + P +SVS+ HS +H
Sbjct: 582 PPVARAPS-QPPSYSQPRPPPRSVSSVSSGNQHSVQVH 618
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,899,296
Number of Sequences: 27780
Number of extensions: 386621
Number of successful extensions: 1330
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1324
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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