Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_F_N11
(690 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 40 4e-04
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 38 0.002
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 34 0.017
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 32 0.068
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 30 0.36
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 29 0.63
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 28 1.5
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 28 1.5
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ... 27 1.9
SPAC23H3.12c |||conserved protein |Schizosaccharomyces pombe|chr... 26 5.9
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom... 25 7.8
SPAC607.05 |rpn9||19S proteasome regulatory subunit Rpn9|Schizos... 25 7.8
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 39.5 bits (88), Expect = 4e-04
Identities = 15/42 (35%), Positives = 26/42 (61%)
Frame = +1
Query: 565 VFCGKIPKDMYEDELIPLFERCGTIWDLRLMMDPMTGANRXY 690
VF G IP D+ E ++ +F + G + +L++DP TG+ + Y
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGY 50
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 37.5 bits (83), Expect = 0.002
Identities = 16/43 (37%), Positives = 27/43 (62%)
Frame = +1
Query: 562 EVFCGKIPKDMYEDELIPLFERCGTIWDLRLMMDPMTGANRXY 690
++F I M EDEL +F + GT+ +R+M +P+T A+R +
Sbjct: 102 DLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGF 144
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 34.3 bits (75), Expect = 0.017
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +1
Query: 562 EVFCGKIPKDMYEDELIPLFERCGTIWDLRLMMDPMTGANRXY 690
++F G +P D E+E F + G + D LMMD TG R +
Sbjct: 248 KMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGF 290
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 32.3 bits (70), Expect = 0.068
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +1
Query: 565 VFCGKIPKDMYEDELIPLFERCGTIWDLRLMMDPMTG 675
VF G + + ED+L F CG I +RL DP +G
Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSG 404
Score = 31.1 bits (67), Expect = 0.16
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +1
Query: 559 CEVFCGKIPKDMYEDELIPLFERCGTIWDLRLMMDPMTGANRXY 690
C VF G++ ++ + L FE GTI R++MD +G ++ Y
Sbjct: 263 CTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGY 306
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 29.9 bits (64), Expect = 0.36
Identities = 11/42 (26%), Positives = 24/42 (57%)
Frame = +1
Query: 565 VFCGKIPKDMYEDELIPLFERCGTIWDLRLMMDPMTGANRXY 690
++ G++P YE ++ F + G + LR+ + TG+++ Y
Sbjct: 107 LYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHY 148
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 29.1 bits (62), Expect = 0.63
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +1
Query: 565 VFCGKIPKDMYEDELIPLFERCGTIWDLRLMMDPMTGANRXY 690
+F G +PKD + L F+R G + +R+ D +G + Y
Sbjct: 94 LFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGY 135
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 27.9 bits (59), Expect = 1.5
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +1
Query: 565 VFCGKIPKDMYEDELIPLFERCGTIWDLRLMMDPMTGANRXY 690
VF G + + E+ L F CG+I +R++ DP T + +
Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGF 313
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 27.9 bits (59), Expect = 1.5
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 229 ELDERALDALKEFPSDGALSVLGQFLDS-NLEHVSNKS 339
EL+E LDAL++ D A SVL + S N E + S
Sbjct: 259 ELNEEQLDALRKKDKDTAASVLAELFGSENTEEIDTVS 296
>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 27.5 bits (58), Expect = 1.9
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +3
Query: 234 GRACSRCLKRISIRRC 281
GR CS CLKR +I+ C
Sbjct: 36 GRPCSNCLKRSTIQSC 51
>SPAC23H3.12c |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 226
Score = 25.8 bits (54), Expect = 5.9
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -3
Query: 106 LPHHRIFLHCPPPFY 62
LP+ R+FLHC P Y
Sbjct: 8 LPNQRVFLHCYPSEY 22
>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = -3
Query: 328 IHVRDLNLKIVQEHLKHRRMEILLRHLEHARPTLRALAFQSYKCR 194
I +R ++L+ +E +H + R++ H + L +AF S+K R
Sbjct: 347 IPIRCIHLQSSEELARHNNV---FRYIHHNQKQLPEIAFNSFKSR 388
>SPAC607.05 |rpn9||19S proteasome regulatory subunit
Rpn9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 381
Score = 25.4 bits (53), Expect = 7.8
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 148 KLIEYGLDPKVAAKLDDIYKTGKL 219
+L+E +D VAA L DIY G+L
Sbjct: 198 ELVERAVDLSVAAILGDIYNFGEL 221
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,631,361
Number of Sequences: 5004
Number of extensions: 49731
Number of successful extensions: 146
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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