Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_F_N11
(690 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical ... 137 6e-33
Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical pr... 36 0.027
AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative RNA-... 36 0.027
Z81035-3|CAB02732.1| 333|Caenorhabditis elegans Hypothetical pr... 32 0.44
Z93384-1|CAB07633.3| 342|Caenorhabditis elegans Hypothetical pr... 31 0.78
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 31 0.78
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 31 0.78
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 31 1.0
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 31 1.0
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 31 1.0
EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA... 31 1.0
EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA... 31 1.0
EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA... 31 1.0
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 31 1.0
Z97628-3|CAB10727.1| 819|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z79755-13|CAB02114.1| 819|Caenorhabditis elegans Hypothetical p... 29 4.1
Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 28 7.2
Z81523-4|CAB04243.1| 824|Caenorhabditis elegans Hypothetical pr... 28 7.2
AY340594-1|AAQ17186.1| 824|Caenorhabditis elegans SPD-2 protein. 28 7.2
Z83104-5|CAC35810.1| 570|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z46828-6|CAA86855.1| 1249|Caenorhabditis elegans Hypothetical pr... 27 9.6
AC084197-21|ABN43081.1| 172|Caenorhabditis elegans Hypothetical... 27 9.6
AB012700-1|BAA89795.1| 570|Caenorhabditis elegans FLR-4 protein. 27 9.6
>AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical
protein F58D5.1 protein.
Length = 611
Score = 137 bits (332), Expect = 6e-33
Identities = 72/194 (37%), Positives = 112/194 (57%), Gaps = 3/194 (1%)
Frame = +1
Query: 118 SDVGRTEDYHKLIEYGLDPKVAAKLDDIYKTGKLAHAELDERALDALKEFPSDGALSVLG 297
S TE+Y KLI + P +A + +IY++G L +LD+RA+D + D A +
Sbjct: 52 SKYAETENYKKLIGLKMKPALADVVCEIYESGLLGPEDLDDRAVDIINSVNLDQAKFIFT 111
Query: 298 QFLDSNLEHVSNKSAFLCGVMKTYRQKSRAGVPGAPALTPTVQVKGPDEEKIKQILARTG 477
+ +S L V+ KS ++ ++++++ + R GA A+T + GP+ +K +L TG
Sbjct: 112 EIKNSELFGVATKSLYVTSLIRSFKDRCRQ--QGAAAVTSGKLINGPELAALKNLLETTG 169
Query: 478 YTLDVTTGQRKYXXXXXXXXXXXXXXXC---EVFCGKIPKDMYEDELIPLFERCGTIWDL 648
YT++VT GQRK+ E++ G IP D++ED L+PLFE+ G IWDL
Sbjct: 170 YTIEVTIGQRKFGGPPPDWEGPATGPAGQGHEIYVGHIPTDVFEDTLVPLFEKSGKIWDL 229
Query: 649 RLMMDPMTGANRXY 690
RLMMDPM+GA+R Y
Sbjct: 230 RLMMDPMSGASRGY 243
>Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical
protein C17D12.2 protein.
Length = 514
Score = 35.9 bits (79), Expect = 0.027
Identities = 14/41 (34%), Positives = 28/41 (68%)
Frame = +1
Query: 562 EVFCGKIPKDMYEDELIPLFERCGTIWDLRLMMDPMTGANR 684
++F G+IP+++ E +L LFE+ G I++ ++ D TG ++
Sbjct: 30 KLFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKDKYTGMHK 70
>AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative
RNA-binding protein protein.
Length = 514
Score = 35.9 bits (79), Expect = 0.027
Identities = 14/41 (34%), Positives = 28/41 (68%)
Frame = +1
Query: 562 EVFCGKIPKDMYEDELIPLFERCGTIWDLRLMMDPMTGANR 684
++F G+IP+++ E +L LFE+ G I++ ++ D TG ++
Sbjct: 30 KLFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKDKYTGMHK 70
>Z81035-3|CAB02732.1| 333|Caenorhabditis elegans Hypothetical
protein C15H11.4 protein.
Length = 333
Score = 31.9 bits (69), Expect = 0.44
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +1
Query: 313 NLEHVSNKSAFLCGVMKTYRQKSRAGVPGAPALTPTVQVKGPDEEKIKQI 462
NL V +K +F G+MK+YRQ A V A ALT ++ G + + +
Sbjct: 194 NLATVDDKKSF--GMMKSYRQSKLANVMHARALTKELRKDGAEHVTVNSL 241
>Z93384-1|CAB07633.3| 342|Caenorhabditis elegans Hypothetical
protein H08M01.1 protein.
Length = 342
Score = 31.1 bits (67), Expect = 0.78
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 237 RACSRCLKRISIRRCFKCSWTIFR 308
+ C +CLK I +CF+ WT+FR
Sbjct: 286 KVCPKCLKMIGCAKCFRW-WTVFR 308
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 31.1 bits (67), Expect = 0.78
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +1
Query: 562 EVFCGKIPKDMYEDELIPLFERCGTIWDLRLMMDPMTGANRXY 690
+VF G +P D E +L FE+ G + D+ D T A R +
Sbjct: 111 KVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNF 153
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 31.1 bits (67), Expect = 0.78
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +1
Query: 562 EVFCGKIPKDMYEDELIPLFERCGTIWDLRLMMDPMTGANRXY 690
+VF G +P D E +L FE+ G + D+ D T A R +
Sbjct: 111 KVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNF 153
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 30.7 bits (66), Expect = 1.0
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = +1
Query: 562 EVFCGKIPKDMYEDELIPLFERCGTIWDLRLMMDPMTGANR 684
++F G+IP+ E + LFE+ G+++ ++ D T A++
Sbjct: 56 KMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASK 96
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 30.7 bits (66), Expect = 1.0
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = +1
Query: 562 EVFCGKIPKDMYEDELIPLFERCGTIWDLRLMMDPMTGANR 684
++F G+IP+ E + LFE+ G+++ ++ D T A++
Sbjct: 56 KMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASK 96
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 30.7 bits (66), Expect = 1.0
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = +1
Query: 562 EVFCGKIPKDMYEDELIPLFERCGTIWDLRLMMDPMTGANR 684
++F G+IP+ E + LFE+ G+++ ++ D T A++
Sbjct: 56 KMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASK 96
>EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA
binding protein variantD protein.
Length = 327
Score = 30.7 bits (66), Expect = 1.0
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = +1
Query: 562 EVFCGKIPKDMYEDELIPLFERCGTIWDLRLMMDPMTGANR 684
++F G+IP+ E + LFE+ G+++ ++ D T A++
Sbjct: 56 KMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASK 96
>EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA
binding protein variantC protein.
Length = 378
Score = 30.7 bits (66), Expect = 1.0
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = +1
Query: 562 EVFCGKIPKDMYEDELIPLFERCGTIWDLRLMMDPMTGANR 684
++F G+IP+ E + LFE+ G+++ ++ D T A++
Sbjct: 56 KMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASK 96
>EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA
binding protein variantB protein.
Length = 193
Score = 30.7 bits (66), Expect = 1.0
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = +1
Query: 562 EVFCGKIPKDMYEDELIPLFERCGTIWDLRLMMDPMTGANR 684
++F G+IP+ E + LFE+ G+++ ++ D T A++
Sbjct: 56 KMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASK 96
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 30.7 bits (66), Expect = 1.0
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = +1
Query: 562 EVFCGKIPKDMYEDELIPLFERCGTIWDLRLMMDPMTGANR 684
++F G+IP+ E + LFE+ G+++ ++ D T A++
Sbjct: 56 KMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASK 96
>Z97628-3|CAB10727.1| 819|Caenorhabditis elegans Hypothetical
protein F43G9.12 protein.
Length = 819
Score = 28.7 bits (61), Expect = 4.1
Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
Frame = +1
Query: 88 ISYDEVAGKDSDVGRTEDYHKLIEYGLDPKVAAKLDDIYKTGKLAHAELD----ERALDA 255
+S+D G DS +D K+ E K+ + + +YK K+ LD + L
Sbjct: 45 MSFDADEGADSTFKLKKDKKKVEELKRQHKLEEEAEKLYKEEKIRKEALDKIVKKEKLSK 104
Query: 256 LKEFPSDGALSVLGQFLDSNLEHVSNKSAF 345
+ + L ++ D + +H+SN ++
Sbjct: 105 EDKKTKNERHKYLDKYRDKSAKHISNSESY 134
>Z79755-13|CAB02114.1| 819|Caenorhabditis elegans Hypothetical
protein F43G9.12 protein.
Length = 819
Score = 28.7 bits (61), Expect = 4.1
Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
Frame = +1
Query: 88 ISYDEVAGKDSDVGRTEDYHKLIEYGLDPKVAAKLDDIYKTGKLAHAELD----ERALDA 255
+S+D G DS +D K+ E K+ + + +YK K+ LD + L
Sbjct: 45 MSFDADEGADSTFKLKKDKKKVEELKRQHKLEEEAEKLYKEEKIRKEALDKIVKKEKLSK 104
Query: 256 LKEFPSDGALSVLGQFLDSNLEHVSNKSAF 345
+ + L ++ D + +H+SN ++
Sbjct: 105 EDKKTKNERHKYLDKYRDKSAKHISNSESY 134
>Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical
protein F22B5.2 protein.
Length = 256
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +1
Query: 580 IPKDMYEDELIPLFERCGTIWDLRLMMDPMTGANRXY 690
+P++M EDEL LF + G + + + D +TG + +
Sbjct: 183 LPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGF 219
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/42 (28%), Positives = 26/42 (61%)
Frame = +1
Query: 565 VFCGKIPKDMYEDELIPLFERCGTIWDLRLMMDPMTGANRXY 690
+F +P ED+L LF++ G + ++++++D TGA + +
Sbjct: 281 LFLRNLPYATKEDDLQFLFKKYGEVSEVQVVIDKKTGACKGF 322
>Z81523-4|CAB04243.1| 824|Caenorhabditis elegans Hypothetical
protein F32H2.3 protein.
Length = 824
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = +1
Query: 307 DSNLEHVSNKSAFLCGVMKTYRQKSRAGVPGAPALTPTVQVKGPD 441
D N+ S+KSAF+ M + + P P Q +GP+
Sbjct: 205 DENVPTTSDKSAFITSPMNSTNHDEKTSTPKRPTNRKIGQYQGPN 249
>AY340594-1|AAQ17186.1| 824|Caenorhabditis elegans SPD-2 protein.
Length = 824
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = +1
Query: 307 DSNLEHVSNKSAFLCGVMKTYRQKSRAGVPGAPALTPTVQVKGPD 441
D N+ S+KSAF+ M + + P P Q +GP+
Sbjct: 205 DENVPTTSDKSAFITSPMNSTNHDEKTSTPKRPTNRKIGQYQGPN 249
>Z83104-5|CAC35810.1| 570|Caenorhabditis elegans Hypothetical
protein F09B12.6 protein.
Length = 570
Score = 27.5 bits (58), Expect = 9.6
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Frame = -1
Query: 231 LCVR*LSSLINVVELGGYLRIQAILNKFV--VIFCPANIRIL-PSYLIIGYFSIALRHSI 61
+C L + + LG +L I + +FV +I N ++ P YLII I L ++
Sbjct: 425 ICYLLLFLSLGITALGSFLLISYFVVRFVRYLIAINCNCDLMQPQYLIISGILIVLMFAL 484
Query: 60 NFASC 46
F+ C
Sbjct: 485 LFSCC 489
>Z46828-6|CAA86855.1| 1249|Caenorhabditis elegans Hypothetical
protein R03D7.1 protein.
Length = 1249
Score = 27.5 bits (58), Expect = 9.6
Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = +1
Query: 229 ELDERALDALKEFPSDGALSVLGQFLDSNLEHVSNKSAFLCGVM-KTYRQKSRAGVPGAP 405
E E D L+EF DG ++++G + +H++ + G+ + Q AG
Sbjct: 288 ETPEEMADVLREFARDGLVNIIGGCCGTTPDHINAMYKAVQGITPRVPPQDPHAGKMLLS 347
Query: 406 ALTPTV 423
L P++
Sbjct: 348 GLEPSI 353
>AC084197-21|ABN43081.1| 172|Caenorhabditis elegans Hypothetical
protein Y73B6BL.47 protein.
Length = 172
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = -3
Query: 151 VCGNLLSGQHQNPSQLPHHRIFL 83
VC L QH NP QLP IFL
Sbjct: 141 VCARDLCNQHSNPFQLPVILIFL 163
>AB012700-1|BAA89795.1| 570|Caenorhabditis elegans FLR-4 protein.
Length = 570
Score = 27.5 bits (58), Expect = 9.6
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Frame = -1
Query: 231 LCVR*LSSLINVVELGGYLRIQAILNKFV--VIFCPANIRIL-PSYLIIGYFSIALRHSI 61
+C L + + LG +L I + +FV +I N ++ P YLII I L ++
Sbjct: 425 ICYLLLFLSLGITALGSFLLISYFVVRFVRYLIAINCNCDLMQPQYLIISGILIVLMFAL 484
Query: 60 NFASC 46
F+ C
Sbjct: 485 LFSCC 489
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,968,941
Number of Sequences: 27780
Number of extensions: 300513
Number of successful extensions: 855
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -