Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_N10
         (887 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.14 |gcv1|n313|glycine decarboxylase T subunit|Schizosac...    31   0.22 
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p...    29   0.67 
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    26   8.2  
SPBC19F8.04c |||nuclease|Schizosaccharomyces pombe|chr 2|||Manual      26   8.2  
SPBC8D2.14c |sed5||SNARE Sed5 |Schizosaccharomyces pombe|chr 2||...    26   8.2  

>SPAC31G5.14 |gcv1|n313|glycine decarboxylase T
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
 Frame = -2

Query: 376 TSAGCTEAECSSLLRSLPRSKGLFLSLPQRQTMVLLTDSTMSELRSRTTPTSQFSSLHFI 197
           T+A C+E + ++L + +   KG+ L   Q + ++ +     + +  +  P   FS L F 
Sbjct: 134 TNAACSEKDEANLKKHIENWKGVELERVQGRALIAIQGPETASVVQKLIPNVDFSVLKFG 193

Query: 196 ASTAM---GAKSIEKRGHYT 146
            S  +   G K +  R  YT
Sbjct: 194 QSAYVDFKGVKCLFSRSGYT 213


>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 600 CKLPVQASFSLVVSNDHRYSCEDCG 526
           C++ +   FS+ + N HRY C  CG
Sbjct: 259 CRMYINP-FSIFIDNGHRYRCNSCG 282


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 18/66 (27%), Positives = 28/66 (42%)
 Frame = -2

Query: 406 SGCGAGAAWSTSAGCTEAECSSLLRSLPRSKGLFLSLPQRQTMVLLTDSTMSELRSRTTP 227
           +G G G+A  TS+    +  S +  S+P S   F S     T  L   +T        T 
Sbjct: 387 TGTGTGSATFTSSPPFYSNSSVIPTSVPSSVSSFTSSNSSYTTTLTASNTTVTFTGTGTG 446

Query: 226 TSQFSS 209
           ++ F+S
Sbjct: 447 SATFTS 452


>SPBC19F8.04c |||nuclease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 607 GIV*TSCSGFFFTSRFQR 554
           G++ TS  GFFF  RF+R
Sbjct: 15  GLITTSIGGFFFLRRFRR 32


>SPBC8D2.14c |sed5||SNARE Sed5 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 14/56 (25%), Positives = 28/56 (50%)
 Frame = -2

Query: 319 SKGLFLSLPQRQTMVLLTDSTMSELRSRTTPTSQFSSLHFIASTAMGAKSIEKRGH 152
           S+ + +SL        +T   + E+R++    SQ  +  F+AS++M A  +   G+
Sbjct: 120 SENVVVSLQNSLANTSMTFKDILEIRTQNMKASQNRTEKFVASSSMNANPLINSGN 175


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,053,937
Number of Sequences: 5004
Number of extensions: 53930
Number of successful extensions: 154
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)