Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_F_N10
(887 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0343 - 3025577-3025810,3026428-3026505,3026630-3026748,302... 32 0.70
10_02_0102 + 5314875-5315231 30 2.8
02_02_0284 - 8547126-8547187,8547306-8547395,8547810-8547861,854... 29 4.9
10_01_0088 + 1087807-1088282,1088752-1088974 29 6.5
05_06_0123 + 25817172-25817470,25818983-25819133,25819217-258193... 29 6.5
03_03_0197 - 15345314-15345995,15346205-15346334,15346453-15346594 29 6.5
10_05_0003 - 7715935-7716336,7716360-7716890 28 8.6
02_02_0355 + 9312814-9313650 28 8.6
02_01_0714 + 5339408-5340020,5340117-5340319,5340408-5340605,534... 28 8.6
01_06_0665 - 31003333-31003680,31003773-31003854,31004068-310041... 28 8.6
>08_01_0343 -
3025577-3025810,3026428-3026505,3026630-3026748,
3027566-3027645,3028034-3028107,3028536-3028620,
3028704-3028789,3028968-3029038,3029126-3029207,
3029490-3029531,3029552-3029584,3029699-3029794,
3030163-3030414,3030970-3031149,3032079-3032119,
3032341-3032470,3032504-3032606,3032686-3032773,
3033151-3033304,3033688-3033739,3033815-3033894,
3034478-3034789,3034886-3034955,3035033-3035100,
3035405-3035678,3036408-3036580,3037036-3037128,
3037228-3037443
Length = 1121
Score = 31.9 bits (69), Expect = 0.70
Identities = 21/71 (29%), Positives = 35/71 (49%)
Frame = -2
Query: 400 CGAGAAWSTSAGCTEAECSSLLRSLPRSKGLFLSLPQRQTMVLLTDSTMSELRSRTTPTS 221
CG G + +A T +EC +LR L + G SLP+ ++ + S +S L+S T
Sbjct: 139 CGKGLSVRKTALDTVSECLQILRFLSKDFGGSTSLPENAHLLRVLISIVSCLQSELNLTD 198
Query: 220 QFSSLHFIAST 188
+ + F + T
Sbjct: 199 KPNGAGFSSHT 209
>10_02_0102 + 5314875-5315231
Length = 118
Score = 29.9 bits (64), Expect = 2.8
Identities = 17/41 (41%), Positives = 20/41 (48%)
Frame = -3
Query: 240 RGPRRPRSFPLYTSSPRRRWERRASKSADTTHVFEPIEDSA 118
R PR P S T RRRW R SK+A T +E +A
Sbjct: 31 RPPRSPHSATTVTRGGRRRWRR--SKTATATSTAAEVEAAA 69
>02_02_0284 -
8547126-8547187,8547306-8547395,8547810-8547861,
8548209-8548284,8550513-8550632,8553334-8553423,
8553842-8554024,8554125-8554185,8554437-8554477,
8554563-8554727,8555699-8555776,8556137-8556282
Length = 387
Score = 29.1 bits (62), Expect = 4.9
Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = -3
Query: 303 YPSRRGRRWSC*LTAR*VSCARGPR---RPRSFPLYTSSPRRRWERRASKSADTTH 145
Y GRR S +R S +R PR RPRS Y+ +PRRR + AS TH
Sbjct: 132 YSDHEGRRSSHYGRSRSRSRSRSPRYRGRPRSRS-YSPAPRRRDDYSASPQRKDTH 186
>10_01_0088 + 1087807-1088282,1088752-1088974
Length = 232
Score = 28.7 bits (61), Expect = 6.5
Identities = 11/20 (55%), Positives = 12/20 (60%), Gaps = 2/20 (10%)
Frame = -2
Query: 433 KGCWRNARG--SGCGAGAAW 380
+GCWR RG G G G AW
Sbjct: 113 RGCWRGRRGCRRGSGGGGAW 132
>05_06_0123 +
25817172-25817470,25818983-25819133,25819217-25819399,
25819740-25819814,25819985-25820140,25820275-25820373,
25820457-25820587,25821077-25821158,25821251-25821598
Length = 507
Score = 28.7 bits (61), Expect = 6.5
Identities = 14/32 (43%), Positives = 23/32 (71%)
Frame = +3
Query: 522 SFRSLRKNIGGRWKRLVKKKPEQEVYTIPPEL 617
+FR LR +GG+ KR+V+++ E+ +IPP L
Sbjct: 115 NFRVLRVQLGGKEKRVVQQQYEE--VSIPPHL 144
>03_03_0197 - 15345314-15345995,15346205-15346334,15346453-15346594
Length = 317
Score = 28.7 bits (61), Expect = 6.5
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +3
Query: 84 SWRSAPKRALSSRCLQSAQKR 146
SWRS PKRA +RC +S + R
Sbjct: 39 SWRSLPKRAGLNRCCKSCRLR 59
>10_05_0003 - 7715935-7716336,7716360-7716890
Length = 310
Score = 28.3 bits (60), Expect = 8.6
Identities = 18/56 (32%), Positives = 24/56 (42%)
Frame = -2
Query: 436 HKGCWRNARGSGCGAGAAWSTSAGCTEAECSSLLRSLPRSKGLFLSLPQRQTMVLL 269
H WR+ GSG G W+ SLL + P FLS P+ ++LL
Sbjct: 251 HALAWRSGVGSGGGDACHWADGYSLNVLLYISLLHT-PSHLEPFLSCPRGNQVILL 305
>02_02_0355 + 9312814-9313650
Length = 278
Score = 28.3 bits (60), Expect = 8.6
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = -2
Query: 424 WRNARGSGCGAGAAWSTSAGC 362
WR RG GC AG T+ C
Sbjct: 217 WRRGRGGGCDAGGGDGTAGRC 237
>02_01_0714 +
5339408-5340020,5340117-5340319,5340408-5340605,
5340703-5340774,5341197-5341292,5341828-5341907,
5341993-5342068,5342152-5342362,5342562-5342755,
5342834-5342939,5343037-5343126,5343470-5344206
Length = 891
Score = 28.3 bits (60), Expect = 8.6
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = -2
Query: 424 WRNARGSGCGAGAAWSTSAGCTEAECS 344
+RN RGSG GAGA + S G AE S
Sbjct: 116 YRNLRGSGSGAGAI-AASGGALLAEAS 141
>01_06_0665 -
31003333-31003680,31003773-31003854,31004068-31004198,
31004272-31004370,31004511-31004666,31004877-31004951,
31005554-31005736,31005833-31005983,31006732-31007027
Length = 506
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +3
Query: 522 SFRSLRKNIGGRWKRLVKKKPEQEVYTIPPEL 617
+FR +R +GGR KR+V ++ E+ IPP L
Sbjct: 114 NFRVIRVQLGGREKRVVSQQYEE--VAIPPHL 143
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,464,417
Number of Sequences: 37544
Number of extensions: 413390
Number of successful extensions: 1686
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1685
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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