Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_N10
         (887 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71178-5|CAA94879.1| 1161|Caenorhabditis elegans Hypothetical pr...    29   3.4  
L25599-1|AAA28053.1|  343|Caenorhabditis elegans Hypothetical pr...    29   5.9  

>Z71178-5|CAA94879.1| 1161|Caenorhabditis elegans Hypothetical
           protein B0024.6 protein.
          Length = 1161

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 678 MLVLKQETSKALVLSVDVNQNSMVVTNSYQHE 773
           +L L    + +L+++VDV+Q   VVT  Y +E
Sbjct: 474 VLTLDSNNNSSLIMTVDVDQQEAVVTKHYTNE 505


>L25599-1|AAA28053.1|  343|Caenorhabditis elegans Hypothetical
           protein F54H12.4 protein.
          Length = 343

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 14/55 (25%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
 Frame = +3

Query: 483 QDNLMQPHGNERASFRSLRKNIGGRWKRLVKKKP--EQEVYTIPPELKPQLKQIY 641
           Q+NL Q + N++ + +  R+N+  +++ + +K+   +++ YT PP  K + +Q++
Sbjct: 68  QENLQQQNDNQKRNVKLERRNL--KYEVIPEKRESYQEKDYTNPPVYKAENEQLF 120


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,279,599
Number of Sequences: 27780
Number of extensions: 318002
Number of successful extensions: 1036
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1036
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)