Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_N10
         (887 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    25   0.92 
M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    25   1.2  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    25   1.2  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    25   1.2  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   8.6  

>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 25.0 bits (52), Expect = 0.92
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = -2

Query: 316 KGLFLSLPQRQTMVLLTDSTMSELRSRTTPTSQFSSLHFIASTAMG-AKSIEKRGHYT 146
           +G+FLSL Q Q M +L D  + E   R+     + SL   A   +G A  +E    YT
Sbjct: 363 QGVFLSLYQPQGMNILGD--LIEGTGRSVNPRYYGSLQAAARKLLGNAPEVENIWDYT 418


>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = -3

Query: 189 RRWERRASKSADTTHVFE---PIEDSASLTRVLA 97
           RRW+RR ++ A T   +E    +E+    TR L+
Sbjct: 1   RRWDRREARRARTAFTYEQLVALENKFKTTRYLS 34


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = +3

Query: 96  APKRALSSRCLQSAQKRV*CPRFSMLFAPIAVEAMKCKEENCEVGVVLERNSLIVLSV 269
           +P     SRC     K   C RF      +  ++ K KE+   V +VL+R  L + ++
Sbjct: 471 SPPAFSHSRCPPEIHKSCICVRFIAEHTKMLEDSTKVKEDWKYVAMVLDRLFLWIFTL 528


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = +3

Query: 96  APKRALSSRCLQSAQKRV*CPRFSMLFAPIAVEAMKCKEENCEVGVVLERNSLIVLSV 269
           +P     SRC     K   C RF      +  ++ K KE+   V +VL+R  L + ++
Sbjct: 471 SPPAFSHSRCPPEIHKSCICVRFIAEHTKMLEDSTKVKEDWKYVAMVLDRLFLWIFTL 528


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = +3

Query: 684 VLKQETSKALVLSVDVNQNSMVVTNSYQHEC 776
           V ++  S   +L   VN+ +  +  +Y +EC
Sbjct: 457 VSRESNSNQFILMTTVNEGNNNMAATYMNEC 487


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,735
Number of Sequences: 438
Number of extensions: 4205
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)