Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_N05
         (681 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.18c |bet3||TRAPP complex subunit Bet3 |Schizosaccharomyc...   145   6e-36
SPBC1718.05 |trs31||TRAPP complex subunit Trs31 |Schizosaccharom...    36   0.007
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce...    27   3.3  
SPBC215.14c |vps20||vacuolar sorting protein Vps20|Schizosacchar...    25   7.7  

>SPAC644.18c |bet3||TRAPP complex subunit Bet3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 183

 Score =  145 bits (351), Expect = 6e-36
 Identities = 74/160 (46%), Positives = 112/160 (70%), Gaps = 3/160 (1%)
 Frame = +1

Query: 211 KVNSELLTLTYGALVSQMLKETENTEXVNKHLERIGYNMGVXLIEDFLARTTSTRCLEMR 390
           KVN+EL  LTYG++V+Q+ K+  N E VN+ L+++GYN+G+ LIEDFLA+T   RC + R
Sbjct: 16  KVNAELFVLTYGSIVAQLCKDM-NYEKVNEELDKMGYNIGIRLIEDFLAKTEWPRCADFR 74

Query: 391 ETADKIQQ-AFKLYLXMQPTVTSXSSAGDEFXLVWDHCPLSEWVEMPSN--NGLKYCALI 561
           ET + + +  FK++L   P ++S S  G+ F L  D  PL+E+VE+P++    L Y  ++
Sbjct: 75  ETGETVAKVGFKVFLNFSPIISSVSDDGNTFVLTLDDNPLAEFVELPADARQKLWYSNIL 134

Query: 562 PGAIRGALQMVQLDVQCWFVQDQLKGDPVTELRVKYLKRL 681
            G IRGAL+M+Q+DV   F++D L+GD  TE+RV +LKR+
Sbjct: 135 CGVIRGALEMLQMDVDAVFLRDILRGDEHTEIRV-HLKRI 173


>SPBC1718.05 |trs31||TRAPP complex subunit Trs31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 209

 Score = 35.5 bits (78), Expect = 0.007
 Identities = 29/133 (21%), Positives = 56/133 (42%), Gaps = 5/133 (3%)
 Frame = +1

Query: 214 VNSELLTLTYGALVSQMLKETENTEXVNKHLERIGYNMGVXLIEDFLARTTS----TRCL 381
           VN       +  L+ ++  +    +   + L   GY +G  L+E  + R  +    TR L
Sbjct: 41  VNLSSFAFIFSELIQRIQSQVSGIQEFEEKLNEHGYRVGQKLVELVVWRERNPKRETRIL 100

Query: 382 EMRETADKIQQAFKLYLXMQPTVTSXSSAGDEFXLVWDHCPLSEWVEMPSN-NGLKYCAL 558
            + +        + L+     ++     A DE+ +V ++  L++++ +P   N L  CA 
Sbjct: 101 GILQYIHSSVWKY-LFGKHADSLEKSKEASDEYMIVDNNPLLNKFISVPKEMNQLNCCAY 159

Query: 559 IPGAIRGALQMVQ 597
           + G I G L   Q
Sbjct: 160 LAGIIEGFLDSAQ 172


>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 813

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -3

Query: 646 PDHLSTDPAQTSIVHLVVPSVEHL*LHRESKRNISGRCYLAS 521
           PDHLS    Q +I   +V  + H  LH     N+   C ++S
Sbjct: 593 PDHLSFQRIQENIYFGIVAGLSHGPLHGFPLTNLQSFCTISS 634


>SPBC215.14c |vps20||vacuolar sorting protein
           Vps20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 226

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +1

Query: 205 AKKVNSELLTLTYGAL--VSQMLKETENTEXVNKHLERIGYNMGVXLIEDFLA 357
           AKK+ S L+T TYG L  + Q+L   E T  + K +   G   G  LI    A
Sbjct: 61  AKKLYSGLITQTYGQLGNIEQLLSTIEFT-LIQKDV-MFGLQEGTNLIRQLQA 111


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,361,272
Number of Sequences: 5004
Number of extensions: 40845
Number of successful extensions: 89
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)