Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_F_N05
(681 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1458 + 26677557-26677616,26677712-26677809,26678569-266786... 147 6e-36
03_03_0283 - 16192534-16192656,16192979-16193161,16193336-161934... 147 6e-36
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 31 0.84
10_08_0939 + 21696941-21697049,21697171-21697255,21698385-216984... 31 1.1
06_03_1221 - 28514952-28518152 29 4.5
09_06_0198 - 21496692-21496991,21497111-21497258,21497341-214975... 28 6.0
>07_03_1458 +
26677557-26677616,26677712-26677809,26678569-26678668,
26678841-26679023,26679347-26679469
Length = 187
Score = 147 bits (357), Expect = 6e-36
Identities = 69/160 (43%), Positives = 110/160 (68%), Gaps = 2/160 (1%)
Frame = +1
Query: 208 KKVNSELLTLTYGALVSQMLKETENTEXVNKHLERIGYNMGVXLIEDFLARTTSTRCLEM 387
++VN+EL TLTYGA+V Q+L + E E VNK L+++GYN+G L+++FLA++ +RC++
Sbjct: 18 ERVNAELFTLTYGAIVRQLLTDLEEVEEVNKQLDQMGYNIGTRLVDEFLAKSNVSRCVDF 77
Query: 388 RETADKIQQ-AFKLYLXMQPTVTSXSSAGDEFXLVWDHCPLSEWVEMPSN-NGLKYCALI 561
+ETAD I + FK++L + TVT+ + G V + PL ++VE+P GL+YC ++
Sbjct: 78 KETADVIAKLGFKMFLGVTATVTNWDAEGTSCSFVLEDNPLVDFVELPDTCQGLQYCNVL 137
Query: 562 PGAIRGALQMVQLDVQCWFVQDQLKGDPVTELRVKYLKRL 681
G IRGAL+MV + + +V+D L+GD E+RVK K++
Sbjct: 138 SGVIRGALEMVSMKTEVTWVRDMLRGDDAYEMRVKLTKQV 177
>03_03_0283 -
16192534-16192656,16192979-16193161,16193336-16193435,
16194627-16194724,16194841-16194900
Length = 187
Score = 147 bits (357), Expect = 6e-36
Identities = 69/160 (43%), Positives = 110/160 (68%), Gaps = 2/160 (1%)
Frame = +1
Query: 208 KKVNSELLTLTYGALVSQMLKETENTEXVNKHLERIGYNMGVXLIEDFLARTTSTRCLEM 387
++VN+EL TLTYGA+V Q+L + E E VNK L+++GYN+G L+++FLA++ +RC++
Sbjct: 18 ERVNAELFTLTYGAIVRQLLTDLEEVEEVNKQLDQMGYNIGTRLVDEFLAKSNVSRCVDF 77
Query: 388 RETADKIQQ-AFKLYLXMQPTVTSXSSAGDEFXLVWDHCPLSEWVEMPSN-NGLKYCALI 561
+ETAD I + FK++L + TVT+ + G V + PL ++VE+P GL+YC ++
Sbjct: 78 KETADVIAKLGFKMFLGVTATVTNWDAEGTSCSFVLEDNPLVDFVELPDTCQGLQYCNVL 137
Query: 562 PGAIRGALQMVQLDVQCWFVQDQLKGDPVTELRVKYLKRL 681
G IRGAL+MV + + +V+D L+GD E+RVK K++
Sbjct: 138 SGVIRGALEMVSMKTEVTWVRDMLRGDDAYEMRVKLTKQV 177
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 31.1 bits (67), Expect = 0.84
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -2
Query: 671 KYFTLNSVTGSPFN*SCTNQHCTSSCTICRAPLIAP 564
+ F ++ G+P N C N +CT +C + + PL P
Sbjct: 521 RQFPCQNLCGNPLN--CGNHYCTKACHVLQIPLSQP 554
>10_08_0939 +
21696941-21697049,21697171-21697255,21698385-21698457,
21698553-21698609,21698660-21698713,21699196-21699246,
21699441-21699503,21700453-21700518,21700625-21700663,
21702190-21702271,21703479-21703536,21703698-21703914,
21704248-21704697
Length = 467
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -3
Query: 211 SW-RPX*KXAETFCRNVLQNLYNFLYSFVKFSKNLLITYA 95
SW P + A+T C+ V+QNL++F VK K L Y+
Sbjct: 81 SWLMPLQEQADTVCKKVIQNLHHFYLCTVKKMKELRKGYS 120
>06_03_1221 - 28514952-28518152
Length = 1066
Score = 28.7 bits (61), Expect = 4.5
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +1
Query: 205 AKKVNSELLTLTYGALVSQMLKETENTEXVNKHLE-RIGYNMGVXLIEDFLARTTSTRCL 381
AK N L LTY ++ E+ + K E R+G+N + L+ TS RCL
Sbjct: 273 AKLTNLITLDLTYNMFTGEL---PESISQLTKLEELRLGHNDFTGTLPPALSNWTSLRCL 329
Query: 382 EMRETA 399
++R +
Sbjct: 330 DLRSNS 335
>09_06_0198 - 21496692-21496991,21497111-21497258,21497341-21497578,
21497679-21497889,21497977-21498170,21498263-21498364,
21498525-21499879,21501193-21501494,21501600-21501750,
21501838-21502102,21502155-21502362,21502467-21502660,
21502749-21502850,21503481-21503680,21504010-21504846,
21505806-21506107,21506209-21506359,21506447-21506684,
21506764-21506971,21507078-21507271,21507322-21507462,
21513484-21514811,21515923-21516227,21516331-21516481,
21516570-21516807,21516881-21517088,21517197-21517366,
21517451-21517549,21517708-21519029,21521601-21521683
Length = 3314
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = +1
Query: 349 FLARTTSTRCLEMRETADKIQQAFKLYLXMQPTVTSXSSAGDEFXLVWDHCPLSEWVEMP 528
+LA T +T L++ + D+I ++ PT +S+G+ L WD SEW+
Sbjct: 2705 YLAATGTTIYLDVVDNDDEIYVKLRVSDGASPTRYVMTSSGEFQLLGWDKSS-SEWITFS 2763
Query: 529 S 531
S
Sbjct: 2764 S 2764
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,853,035
Number of Sequences: 37544
Number of extensions: 253671
Number of successful extensions: 524
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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