Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_F_N05
(681 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z22176-4|CAA80133.1| 181|Caenorhabditis elegans Hypothetical pr... 109 1e-24
Z68006-7|CAA91995.2| 783|Caenorhabditis elegans Hypothetical pr... 30 1.3
AF497831-1|AAM18109.1| 783|Caenorhabditis elegans putative Na-H... 30 1.3
Z92808-1|CAB07266.2| 606|Caenorhabditis elegans Hypothetical pr... 28 5.4
AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical... 28 5.4
U41104-4|AAK67239.1| 388|Caenorhabditis elegans Nuclear hormone... 28 7.1
AF083231-1|AAD03689.1| 388|Caenorhabditis elegans nuclear recep... 28 7.1
Z74042-16|CAA98527.3| 512|Caenorhabditis elegans Hypothetical p... 27 9.4
Z74042-15|CAD54157.1| 505|Caenorhabditis elegans Hypothetical p... 27 9.4
>Z22176-4|CAA80133.1| 181|Caenorhabditis elegans Hypothetical
protein ZK1098.5 protein.
Length = 181
Score = 109 bits (263), Expect = 1e-24
Identities = 58/140 (41%), Positives = 91/140 (65%), Gaps = 5/140 (3%)
Frame = +1
Query: 202 DAKKVNSELLTLTYGALVSQMLKETENTEXVNKHLERIGYNMGVXLIEDFLARTTST-RC 378
D+KK+++EL LTYGA+V++MLK+ E+ + V L+++G+NMG L +DFLA+ + RC
Sbjct: 11 DSKKMSAELFCLTYGAMVTEMLKDYEDPKDVTIQLDKMGFNMGTRLADDFLAKNANVPRC 70
Query: 379 LEMRETADKI-QQAFKLYLXMQPTVTSXSSAGDEFXLVWDHCPLSEWVEMPS---NNGLK 546
++ R+ AD + + A YL + T +S +S EF + + PL+E V++P+ + GL
Sbjct: 71 VDTRQIADVLCRNAIPCYLGISATASSWTSGDREFTITLEANPLTELVQVPAHLVSAGLS 130
Query: 547 YCALIPGAIRGALQMVQLDV 606
Y LI GAIRGAL+ V V
Sbjct: 131 YSQLIAGAIRGALEAVHFKV 150
>Z68006-7|CAA91995.2| 783|Caenorhabditis elegans Hypothetical
protein K09C8.1 protein.
Length = 783
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = -2
Query: 467 ALLXLVTVGCMXRYSLKACCILSAVSLISKQRVDVVRARKSSISXTPMLY 318
ALL L+ VG M +Y+L IL+ SL++ V A + MLY
Sbjct: 216 ALLILIWVGIMGKYNLSVMDILTFASLVAAVDPVAVLAVFQEVGVNKMLY 265
>AF497831-1|AAM18109.1| 783|Caenorhabditis elegans putative Na-H
exchanger isoform 7 protein.
Length = 783
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = -2
Query: 467 ALLXLVTVGCMXRYSLKACCILSAVSLISKQRVDVVRARKSSISXTPMLY 318
ALL L+ VG M +Y+L IL+ SL++ V A + MLY
Sbjct: 216 ALLILIWVGIMGKYNLSVMDILTFASLVAAVDPVAVLAVFQEVGVNKMLY 265
>Z92808-1|CAB07266.2| 606|Caenorhabditis elegans Hypothetical
protein M04C3.2 protein.
Length = 606
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +1
Query: 136 CKESYTNSATRFYKMSRQXSXXDAKKVNSELLTLTYGALVS-QMLKET 276
C E+ N A FYK+ R+ D V +++ YG L + Q LK T
Sbjct: 95 CSENSQNDALSFYKLKRKTKSQDF--VEEDIVLANYGLLETIQELKVT 140
>AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical
protein Y45F10B.10 protein.
Length = 1592
Score = 28.3 bits (60), Expect = 5.4
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +1
Query: 532 NNGLKYCALIPGAIRGALQMVQLDV-QCWFVQDQLKGDPVTELR 660
+N KY A G G + + L+V QC F Q KGDP+T +R
Sbjct: 1173 SNDDKYAAC--GTNNGIVALWDLEVCQCVFTTIQNKGDPITCIR 1214
>U41104-4|AAK67239.1| 388|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 16 protein.
Length = 388
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 180 HFVETCCRICITFFTVS*SSQRTYS 106
HF CR C FF + S+++TYS
Sbjct: 25 HFGAEACRACAAFFRRTVSNRKTYS 49
>AF083231-1|AAD03689.1| 388|Caenorhabditis elegans nuclear receptor
NHR-16 protein.
Length = 388
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 180 HFVETCCRICITFFTVS*SSQRTYS 106
HF CR C FF + S+++TYS
Sbjct: 25 HFGAEACRACAAFFRRTVSNRKTYS 49
>Z74042-16|CAA98527.3| 512|Caenorhabditis elegans Hypothetical
protein T11F9.2b protein.
Length = 512
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 265 LKETENTEXVNKHLERIGYNMGVXLIEDFLARTTSTR 375
L + E TE K + + ++ + L + LART STR
Sbjct: 210 LSDVERTEQQEKEMAELANDLEMALTNNVLARTFSTR 246
>Z74042-15|CAD54157.1| 505|Caenorhabditis elegans Hypothetical
protein T11F9.2a protein.
Length = 505
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 265 LKETENTEXVNKHLERIGYNMGVXLIEDFLARTTSTR 375
L + E TE K + + ++ + L + LART STR
Sbjct: 203 LSDVERTEQQEKEMAELANDLEMALTNNVLARTFSTR 239
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,177,731
Number of Sequences: 27780
Number of extensions: 233851
Number of successful extensions: 680
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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