Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_F_N03
(538 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0470 - 10700092-10700505 134 3e-32
10_08_0951 - 21769342-21769752 134 4e-32
08_02_1046 - 23919990-23920183,23920251-23920479,23920624-239210... 31 0.77
06_01_0520 + 3761990-3762327,3763304-3763589,3763746-3763820,376... 31 0.77
04_03_0540 + 16929782-16929834,16929937-16930032,16930111-169301... 30 1.3
01_06_1350 + 36505926-36505978,36506081-36506176,36506255-365063... 30 1.3
09_01_0103 - 1628763-1628879,1641827-1642921,1645126-1645476,164... 29 3.1
04_04_1192 + 31611804-31612113,31612235-31614058,31614098-316148... 28 4.1
10_05_0026 + 8262237-8262899,8263300-8263509,8263599-8265480,826... 28 5.4
08_02_1498 + 27553449-27553730,27553834-27553946,27554063-275541... 28 5.4
08_02_0167 - 13564466-13566227,13566361-13566644,13566684-135675... 28 5.4
08_01_0441 + 3890231-3890845,3891253-3894220,3906625-3906713,390... 28 5.4
06_03_0860 + 25484826-25485758,25486155-25486406 28 5.4
10_02_0059 + 4785858-4786988 27 7.2
09_04_0061 - 14256767-14256845,14256862-14257224,14260846-14261555 27 7.2
09_02_0555 - 10588685-10592038 27 7.2
07_03_1512 + 27288779-27289222,27298101-27298399,27298499-272985... 27 7.2
03_02_1029 - 13488535-13493037 27 7.2
08_01_0775 - 7531397-7531564,7531590-7532771 27 9.5
08_01_0649 + 5607234-5608397,5609358-5609513,5609598-5609796,561... 27 9.5
04_04_1327 + 32677408-32677460,32677563-32677658,32677737-326778... 27 9.5
01_01_0469 - 3456067-3456123,3456414-3456565,3456649-3456779,345... 27 9.5
>02_02_0470 - 10700092-10700505
Length = 137
Score = 134 bits (325), Expect = 3e-32
Identities = 61/126 (48%), Positives = 90/126 (71%), Gaps = 3/126 (2%)
Frame = +2
Query: 77 LVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPF 256
++L GRYAGRKA++V+ ++EGT D+PYGH VAG+ +YP+KV ++ K K+S++K F
Sbjct: 12 ILLQGRYAGRKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKCF 71
Query: 257 VKVVNYNHLMPTRYTVDFSFEKFSAKDLKDPAKR-KKLRF--NTRVRFEERYKSGKNKWF 427
+K+VN+ H+MPTRYT+D F+ ++ A R KK+ + R EER+K+GKN+WF
Sbjct: 72 LKLVNFTHIMPTRYTLDVDFKDVASGGPDALATRDKKVAACKAAKARLEERFKTGKNRWF 131
Query: 428 FQKLRF 445
F KLRF
Sbjct: 132 FTKLRF 137
>10_08_0951 - 21769342-21769752
Length = 136
Score = 134 bits (324), Expect = 4e-32
Identities = 58/125 (46%), Positives = 90/125 (72%), Gaps = 2/125 (1%)
Frame = +2
Query: 77 LVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPF 256
++L GR+AGRKA++V+ ++EGT D+PYGH VAG+ +YP+KV ++ K K+S++K F
Sbjct: 12 ILLQGRFAGRKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKCF 71
Query: 257 VKVVNYNHLMPTRYTVDFSFEKFSAKDLKDPAKRKKLRF--NTRVRFEERYKSGKNKWFF 430
+K+VN+ HLMPTRYT+D ++ +A + KK+ + + R E+R+K+GKN+WFF
Sbjct: 72 LKLVNFTHLMPTRYTLDVDLKEVAAGPDALATRDKKVAACKSAKARLEDRFKTGKNRWFF 131
Query: 431 QKLRF 445
KLRF
Sbjct: 132 TKLRF 136
>08_02_1046 -
23919990-23920183,23920251-23920479,23920624-23921057,
23921426-23921567,23922163-23922255,23923132-23923245,
23924181-23924266,23924458-23924506,23924717-23924783,
23925550-23925665,23925698-23925821,23926465-23926553,
23926810-23927061
Length = 662
Score = 30.7 bits (66), Expect = 0.77
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +1
Query: 94 VRGSQGYRSQELRRRYLRQAVRACLRRWYRQVPPESAQ--EDGKE*NPQEVQDKAFRQGC 267
V G+ G + ++RR+L QA+ + R R PP +A E + P +++ AF +
Sbjct: 24 VAGAGGRKRGRVQRRHLTQALESFWRHAPRPAPPAAAARGEANRSWQPPPLENPAFEEYY 83
Query: 268 KLQSL 282
K Q +
Sbjct: 84 KEQRI 88
>06_01_0520 + 3761990-3762327,3763304-3763589,3763746-3763820,
3764013-3764961,3766967-3767064,3768144-3768284,
3768758-3768874,3768924-3769013,3769014-3771818
Length = 1632
Score = 30.7 bits (66), Expect = 0.77
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Frame = +1
Query: 79 GLKWPVRGSQGYRSQELRRRYLRQAVRACLRRWYRQ--VPPE-SAQEDGKE*N-PQEVQD 246
G KW + + RS E +R ++ +A+R +R + ++ +PP DG E N +EV D
Sbjct: 1000 GNKWDMCTKEHSRSNEFKRLFVPEAIRKLIRPYDKELSIPPVFPGVHDGNEVNSKEEVND 1059
Query: 247 KA 252
+
Sbjct: 1060 SS 1061
>04_03_0540 +
16929782-16929834,16929937-16930032,16930111-16930185,
16930819-16930893,16930987-16931209,16931303-16931546,
16932111-16932568,16932647-16932928,16933032-16933733
Length = 735
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 313 TEVNCITCWHQVIVVYNLDERLYLGPLVDFILSHPLVHF 197
TE + WH++I YNL++ +YL + D V+F
Sbjct: 312 TEEEFVAAWHKLIRDYNLEKSVYLRHIWDIRRKWAFVYF 350
>01_06_1350 +
36505926-36505978,36506081-36506176,36506255-36506329,
36506964-36507038,36507132-36507348,36507442-36507685,
36508250-36508707,36508786-36509067,36509171-36509872
Length = 733
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 313 TEVNCITCWHQVIVVYNLDERLYLGPLVDFILSHPLVHF 197
TE + WH++I YNL++ +YL + D V+F
Sbjct: 310 TEEEFVAAWHKLIRDYNLEKSVYLRHIWDIRRKWAFVYF 348
>09_01_0103 -
1628763-1628879,1641827-1642921,1645126-1645476,
1645567-1645734
Length = 576
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = -2
Query: 369 RNFLRLAGSFRSFALNFSKLKSTV*RV 289
R+FL LAG +R F NFSK+ ++ R+
Sbjct: 453 RSFLGLAGYYRRFIENFSKIAKSMTRL 479
>04_04_1192 + 31611804-31612113,31612235-31614058,31614098-31614842,
31615047-31616835,31617136-31617163,31617343-31617794
Length = 1715
Score = 28.3 bits (60), Expect = 4.1
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Frame = +2
Query: 179 IDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSF----EKFSAKDLK 343
I Y R++ M ++ + K+K F +NY+H R T ++ E S KDLK
Sbjct: 919 IGTYNRELTSNMRILRMERCDKLKDFTLFLNYDHFRVERKTWQWTILPFEEMHSLKDLK 977
>10_05_0026 + 8262237-8262899,8263300-8263509,8263599-8265480,
8265508-8265704,8275672-8275824
Length = 1034
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -2
Query: 369 RNFLRLAGSFRSFALNFSKLKSTV*RV 289
R+FL LAG +R F NFSK+ + R+
Sbjct: 954 RSFLGLAGYYRRFIENFSKIDKPMTRL 980
>08_02_1498 +
27553449-27553730,27553834-27553946,27554063-27554129,
27554310-27554402,27554516-27554659,27554860-27554954,
27555120-27555412,27555514-27555632,27555742-27556094,
27556177-27556286,27556403-27556512,27556802-27557671
Length = 882
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = +2
Query: 83 LSGRYAGRKAIVVKNYDEGTSD-KPYGHAFVAGIDRYPRKVHKRMGKNKI 229
L R AG + ++ + GT D G V G+D R+VH G +
Sbjct: 599 LEHRMAGVYTVTIRGLNTGTLDLTTNGWGHVVGLDGERRRVHSEQGMGAV 648
>08_02_0167 -
13564466-13566227,13566361-13566644,13566684-13567540,
13567684-13567957,13567973-13568218
Length = 1140
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = -2
Query: 369 RNFLRLAGSFRSFALNFSKL 310
R+FL LAG +R F NFSK+
Sbjct: 505 RSFLGLAGYYRRFIKNFSKI 524
>08_01_0441 + 3890231-3890845,3891253-3894220,3906625-3906713,
3908317-3908337
Length = 1230
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -2
Query: 369 RNFLRLAGSFRSFALNFSKLKSTV*RV 289
R+FL LAG +R F NFSK+ + R+
Sbjct: 985 RSFLGLAGYYRRFIENFSKIAKPMTRL 1011
>06_03_0860 + 25484826-25485758,25486155-25486406
Length = 394
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 132 TKVPPTSRTGMPSSLVSTGTPGKCTRGWER 221
T PP+ R + SSL+ TP KC+ G E+
Sbjct: 130 TPRPPSVRPVVASSLLPYTTPAKCSTGGEQ 159
>10_02_0059 + 4785858-4786988
Length = 376
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = -2
Query: 369 RNFLRLAGSFRSFALNFSKL 310
R+FL LAG +R F NFSK+
Sbjct: 224 RSFLGLAGYYRRFIENFSKI 243
>09_04_0061 - 14256767-14256845,14256862-14257224,14260846-14261555
Length = 383
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = -2
Query: 369 RNFLRLAGSFRSFALNFSKL 310
R+FL LAG +R F NFSK+
Sbjct: 281 RSFLGLAGYYRRFIENFSKI 300
>09_02_0555 - 10588685-10592038
Length = 1117
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = -2
Query: 369 RNFLRLAGSFRSFALNFSKL 310
R+FL LAG +R F NFSK+
Sbjct: 411 RSFLGLAGYYRRFIENFSKI 430
>07_03_1512 + 27288779-27289222,27298101-27298399,27298499-27298589,
27298701-27298766,27299151-27302660,27311604-27312224
Length = 1676
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = -2
Query: 369 RNFLRLAGSFRSFALNFSKL 310
R+FL LAG +R F NFSK+
Sbjct: 1071 RSFLGLAGYYRRFIENFSKI 1090
>03_02_1029 - 13488535-13493037
Length = 1500
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = -2
Query: 369 RNFLRLAGSFRSFALNFSKL 310
R+FL LAG +R F NFSK+
Sbjct: 794 RSFLGLAGYYRRFIENFSKI 813
>08_01_0775 - 7531397-7531564,7531590-7532771
Length = 449
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -2
Query: 369 RNFLRLAGSFRSFALNFSKL 310
R FL LAG +R F NFSK+
Sbjct: 90 RRFLGLAGYYRRFIENFSKI 109
>08_01_0649 +
5607234-5608397,5609358-5609513,5609598-5609796,
5612419-5613608,5614505-5614660,5614742-5615041
Length = 1054
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/61 (24%), Positives = 24/61 (39%)
Frame = +2
Query: 125 NYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTV 304
++DE HA G + + G + I P +K++ HL TR+T
Sbjct: 613 SHDEDDVSAWIAHAVRRGAEEIDLSARRHHGYPVPDYKHFISPKIKILKLTHLGTTRFTA 672
Query: 305 D 307
D
Sbjct: 673 D 673
>04_04_1327 +
32677408-32677460,32677563-32677658,32677737-32677811,
32678446-32678520,32678615-32678837,32678931-32679174,
32679740-32680197,32680276-32680470,32680660-32681361
Length = 706
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = -1
Query: 358 TLSRVFQVFCAEFFKTEVNCITCWHQVIVVYNLDERLYLGPLVDFILSHPLVHF 197
T +VF + TE + WH++I YNL++ + L + D V+F
Sbjct: 298 TFKKVFHKVLTQTL-TEEEFVAAWHKLIRDYNLEKSVNLRHIWDIRRKWAFVYF 350
>01_01_0469 -
3456067-3456123,3456414-3456565,3456649-3456779,
3456846-3458036,3458460-3458541,3458947-3458984,
3459091-3459250,3459356-3459557,3460245-3460329,
3460809-3460863,3461230-3461325,3461807-3461940,
3462031-3462043,3462315-3462419,3462935-3463121
Length = 895
Score = 27.1 bits (57), Expect = 9.5
Identities = 17/63 (26%), Positives = 24/63 (38%)
Frame = +2
Query: 194 RKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEKFSAKDLKDPAKRKKLRF 373
R H R+ N + S+ ++ N PT F + KD P +R R
Sbjct: 292 RSKHGRLDDNLTDENSERLWKMEPFNSEDRFPTPIVEQFDTRDYGFKDRYSPEQRTSTRT 351
Query: 374 NTR 382
NTR
Sbjct: 352 NTR 354
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,190,592
Number of Sequences: 37544
Number of extensions: 238459
Number of successful extensions: 775
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -