Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_N01
         (822 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c...    31   0.26 
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch...    27   2.4  
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ...    26   7.4  
SPAC1D4.03c |aut12||autophagy associated protein Aut12|Schizosac...    25   9.8  
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    25   9.8  

>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 547

 Score = 30.7 bits (66), Expect = 0.26
 Identities = 15/56 (26%), Positives = 24/56 (42%)
 Frame = +3

Query: 642 HSPLEGGHHSRARYYHQQMHAPYSAAVGSHGRTLSGXSGQVCRPHFHTPLHPWLES 809
           H PL    ++    +H Q+H+ + +   S  R  SG S      +    L  WLE+
Sbjct: 73  HIPLPNPSNNNDNIFHPQVHSSFHSRSASRQRRRSGLSRSNATRYSRRSLSDWLET 128


>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 11/22 (50%), Positives = 18/22 (81%)
 Frame = +2

Query: 356 SVQHAKTELDRFRLVIERTRTE 421
           S++ AKTEL++ R+ +ERT+ E
Sbjct: 404 SIKKAKTELEQARIELERTQRE 425


>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 463

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 660 GHHSRARYYHQQMHAPYSAAVG 725
           GH S +RY+ Q +H+  S AVG
Sbjct: 367 GHRSLSRYFRQNLHSS-STAVG 387


>SPAC1D4.03c |aut12||autophagy associated protein
           Aut12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = -1

Query: 264 NVDHYHYLSLLILTDNNTILSSAPFRLRVHFNVEN*TLKILNCITDHSTIKQYVY 100
           N D Y Y+    L   +T+L        V F +++   K+   I DH  +K+ +Y
Sbjct: 334 NPDAYIYIYSYFLC-KDTVLIMGSSESGVFFEMQSVKCKVAQEIQDHGWLKKLIY 387


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 14  RPNRVGSRVATHLHLRLRFP 73
           RP+ + S  A H+HLRL FP
Sbjct: 406 RPSLLISVPAFHIHLRLNFP 425


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,733,441
Number of Sequences: 5004
Number of extensions: 48956
Number of successful extensions: 136
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)