Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_N01
         (822 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    32   0.57 
Z81547-1|CAB04459.1|  354|Caenorhabditis elegans Hypothetical pr...    30   2.3  
Z99281-28|CAB16503.1|  633|Caenorhabditis elegans Hypothetical p...    29   3.0  
AL117200-9|CAB60586.1|  807|Caenorhabditis elegans Hypothetical ...    29   5.3  
U52001-2|AAK68379.1|  104|Caenorhabditis elegans Feminization of...    28   7.0  
U52001-1|AAA96093.1|  656|Caenorhabditis elegans Feminization of...    28   7.0  
J03172-1|AAA28055.1|  656|Caenorhabditis elegans protein ( C.ele...    28   7.0  

>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +3

Query: 585 NGSPAAGDVNAETNGDGFFHSPLEGGHHSRARYYHQQMHAPYSAAVGSHG 734
           +GS      + E++G G  H+P   GHH     +H    A Y A  G HG
Sbjct: 580 HGSHGVHHGHHESHGHGH-HAPAHHGHHGEHGVHHGHHGAGYGAHHGHHG 628



 Score = 30.7 bits (66), Expect = 1.3
 Identities = 20/59 (33%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
 Frame = +3

Query: 624 NGDGFFHSPLEGGHHSRARYYHQQMHAPYSAAVGSHGR--TLSGXSGQVCRPHFHTPLH 794
           +G+   H    G HHS A + H   H    A  G HG   T  G  G+    H H P H
Sbjct: 484 HGEHGTHHGHHGSHHSPAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGE----HHHAPAH 538


>Z81547-1|CAB04459.1|  354|Caenorhabditis elegans Hypothetical
           protein F53F8.1 protein.
          Length = 354

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +3

Query: 621 TNGDGFFH-SPLEGGHHSR-ARYYHQQMHAPYSAAVGS 728
           ++ +G++H S  +  HH    ++YHQQ H  Y+ A  +
Sbjct: 63  SSSNGYYHQSQYQNAHHQHHQQHYHQQSHHHYNGAAAA 100


>Z99281-28|CAB16503.1|  633|Caenorhabditis elegans Hypothetical
           protein Y57G11C.1 protein.
          Length = 633

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = -1

Query: 264 NVDHYHYLSLLILTDNNTILSSAPFRLRVHFNVEN*TLKILNCITDHSTIKQYV 103
           N++H HY S + L      L S   R  + F +EN T + +    + + + ++V
Sbjct: 441 NINHQHYHSNIALVAQEPTLFSGTIRENILFGIENGTEEAMLKAAEMANVHEFV 494


>AL117200-9|CAB60586.1|  807|Caenorhabditis elegans Hypothetical
           protein Y50E8A.16 protein.
          Length = 807

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/54 (24%), Positives = 27/54 (50%)
 Frame = -1

Query: 264 NVDHYHYLSLLILTDNNTILSSAPFRLRVHFNVEN*TLKILNCITDHSTIKQYV 103
           N+DH HY + + L      L S   R  + + +EN T + +  + + + + ++V
Sbjct: 617 NIDHLHYHTNIALVAQEPTLFSGTVRENILYGLENGTDEDMMRVAEMANVHEFV 670


>U52001-2|AAK68379.1|  104|Caenorhabditis elegans Feminization of xx
           and xo animalsprotein 1, isoform b protein.
          Length = 104

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +3

Query: 174 NGHANGMELMIELCYYPSVLTVINSDSD 257
           NGHAN +E ++E+   PSV  V+  D++
Sbjct: 58  NGHANVVEYLLEIGADPSVRGVVEFDNE 85


>U52001-1|AAA96093.1|  656|Caenorhabditis elegans Feminization of xx
           and xo animalsprotein 1, isoform a protein.
          Length = 656

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +3

Query: 174 NGHANGMELMIELCYYPSVLTVINSDSD 257
           NGHAN +E ++E+   PSV  V+  D++
Sbjct: 58  NGHANVVEYLLEIGADPSVRGVVEFDNE 85


>J03172-1|AAA28055.1|  656|Caenorhabditis elegans protein (
           C.elegans fem-1 gene,complete cds. ).
          Length = 656

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +3

Query: 174 NGHANGMELMIELCYYPSVLTVINSDSD 257
           NGHAN +E ++E+   PSV  V+  D++
Sbjct: 58  NGHANVVEYLLEIGADPSVRGVVEFDNE 85


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,413,943
Number of Sequences: 27780
Number of extensions: 284661
Number of successful extensions: 750
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)