Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_N01
         (822 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   6.0  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   7.9  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   7.9  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   7.9  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   7.9  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 648 PLEGGHHSRARYYHQQMH 701
           P +G H S+A+  H Q H
Sbjct: 181 PQQGQHQSQAQQQHLQAH 198


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 555 LQQRWYESRLNGS 593
           LQQ+WY+ RL  S
Sbjct: 113 LQQQWYDPRLRYS 125


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 555 LQQRWYESRLNGS 593
           LQQ+WY+ RL  S
Sbjct: 113 LQQQWYDPRLRYS 125


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 555 LQQRWYESRLNGS 593
           LQQ+WY+ RL  S
Sbjct: 164 LQQQWYDPRLRYS 176


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 555 LQQRWYESRLNGS 593
           LQQ+WY+ RL  S
Sbjct: 113 LQQQWYDPRLRYS 125


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,304
Number of Sequences: 438
Number of extensions: 3597
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26217432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)