Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_M18
         (855 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces ...    34   0.022
SPCC18B5.11c |cds1||replication checkpoint kinase Cds1|Schizosac...    28   1.9  
SPBC30D10.02 |||transcription corepressor |Schizosaccharomyces p...    27   2.6  
SPBC1604.13c |mrpl32||mitochondrial ribosomal protein subunit L3...    27   3.4  
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom...    27   4.5  
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo...    26   5.9  
SPBC1734.04 ||SPBC337.20|mannosyltransferase complex subunit, An...    26   5.9  

>SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 485

 Score = 34.3 bits (75), Expect = 0.022
 Identities = 18/52 (34%), Positives = 29/52 (55%)
 Frame = +2

Query: 611 PIVFTDSKPDLLTKEIIHLNEMETDENDEKEFNDLITKNFMSRIMEVGSPVP 766
           P+VF+  KPD     ++ L+E E ++ D  E + L    F +RI+ V  P+P
Sbjct: 291 PVVFSTEKPDPRKASLLPLSEEEFEKGDVDELSAL--PEFRARILPVIGPMP 340


>SPCC18B5.11c |cds1||replication checkpoint kinase
           Cds1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +2

Query: 626 DSKPDL--LTKEIIHLNEMETDENDEKEFNDLITKNFMSRIMEVGSPVPKQVYSSG 787
           D KP L  L + ++HL++      D K  N LIT +F  +I + G  + K ++ +G
Sbjct: 270 DCKPLLKQLLETLLHLHKQGVTHRDIKPENILITNDFHLKISDFG--LAKVIHGTG 323


>SPBC30D10.02 |||transcription corepressor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 161

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
 Frame = +2

Query: 602 LPQPIVFTDSKPDLLTK---EIIHLNEMETDENDEKEFNDLITKNFMSRIME 748
           LP  + FT    DLL +   E IHL   E +E  EKE    I    + + +E
Sbjct: 25  LPVDLTFTKEARDLLIECCVEFIHLVSSEANEICEKEAKKTIAAEHIIKALE 76


>SPBC1604.13c |mrpl32||mitochondrial ribosomal protein subunit
           L32|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 103

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 19/61 (31%), Positives = 24/61 (39%)
 Frame = -2

Query: 245 LWNEFYTMFPKTHDIYFLGSSWPAVTFNGDVLLKNTPQNCCSVRGYYKLVSHLSCSLFTN 66
           +WN      PK    Y    S      +G  L K+   N C + G +KL  HL    F N
Sbjct: 41  IWNSILLAVPKKKTSYTKKRSR---LLSGKAL-KDKTVNRCPICGSFKLAHHLCSHCFRN 96

Query: 65  I 63
           I
Sbjct: 97  I 97


>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 20/62 (32%), Positives = 29/62 (46%)
 Frame = +2

Query: 539 NVIIPKYMIPHYIKYVDKPGFLPQPIVFTDSKPDLLTKEIIHLNEMETDENDEKEFNDLI 718
           ++I   Y +  + K V K  FL  P   T  K  L+ K++ H NE        +E N+LI
Sbjct: 189 DIIHEIYNVGSHFKEVTK--FL-WPFTLTPVKHSLMEKKVKHFNEGRKAGYCGEEINELI 245

Query: 719 TK 724
            K
Sbjct: 246 KK 247


>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
           component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 536

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
 Frame = +2

Query: 527 NYFRNVIIPKYMIPH--YIKYVDKPGFLPQPIV-----FTDSKPDLLTKEIIHLNEMETD 685
           NYFRNV+          YI++++      Q +V     + DS  +LL+ EII    ++  
Sbjct: 330 NYFRNVLYQTERSKSLGYIRHIEHLQVFRQAMVNYYRLYEDSLSELLSGEIITEATLKIV 389

Query: 686 ENDEKEFNDLITK 724
           ++  K+F +L  K
Sbjct: 390 KDRRKKFLELCVK 402


>SPBC1734.04 ||SPBC337.20|mannosyltransferase complex subunit, Anp
           family |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 430

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = +2

Query: 614 IVFTDSKPDLLTKEII--HLNEMETDENDEKEFNDLI 718
           + F  S  D  T E++  HL+ ++ DE++ K FN+++
Sbjct: 132 LAFLISDTDDNTLEVLKQHLDAIQNDEDESKHFNNVL 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,605,820
Number of Sequences: 5004
Number of extensions: 80024
Number of successful extensions: 231
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)