Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_M18
         (855 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0175 - 1198657-1198737,1199080-1199190,1199488-1199540,120...    29   4.7  
05_05_0049 - 21895172-21895181,21895297-21896717                       29   6.2  
05_04_0123 + 18210069-18213737                                         28   8.3  
04_04_0468 - 25447774-25447945,25449016-25449130,25449541-254498...    28   8.3  
03_06_0156 + 32035503-32035769,32036436-32036539,32036734-320368...    28   8.3  
02_05_0183 + 26537676-26537752,26538481-26538649,26538736-265389...    28   8.3  

>02_01_0175 -
           1198657-1198737,1199080-1199190,1199488-1199540,
           1200131-1200215,1200519-1200614,1200729-1200821,
           1201640-1201696,1201826-1201975,1202819-1202893
          Length = 266

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = +2

Query: 503 DKQIPSPMNYFRNVIIPKYMIPHYIKYVDKPGFLPQPIVFT--DSKPDLLTKEIIHL 667
           D  I +P     NV +  Y  P Y   V++  F PQP V +  + K  +L K + HL
Sbjct: 166 DASIQTPEYRPINVFVNFYSEPEYKFKVERTNFFPQPKVNSAFNGKRKMLRKSLQHL 222


>05_05_0049 - 21895172-21895181,21895297-21896717
          Length = 476

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +3

Query: 156 VSVKSHRRPTAA*KVYVMGFGKHSVKFIPKQLVAENIS*MHSF 284
           VS   HRRP  + ++ V+G G   V F+    V +  S  H F
Sbjct: 155 VSYDGHRRPLTSFQLTVLGDGAVFVGFVANHAVVDGTSFWHFF 197


>05_04_0123 + 18210069-18213737
          Length = 1222

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +2

Query: 677 ETDENDEKEFNDLITKNFMSRIMEVGSPVPKQVYSSGGSN 796
           + +EN    F +L+ ++F   + ++GS   ++VY  G S+
Sbjct: 450 DIEENGNHVFWELVWRSFFQNVKQIGSIFQRKVYRYGQSD 489


>04_04_0468 -
           25447774-25447945,25449016-25449130,25449541-25449877,
           25450299-25450628,25451090-25451362,25451471-25451929,
           25452307-25452516,25452617-25452828,25453304-25453404,
           25453584-25454008,25454167-25454360,25454436-25454701,
           25454809-25455015,25455121-25455281,25455741-25455933,
           25456158-25456251,25457238-25457373,25458074-25458202,
           25458315-25458449,25458549-25458613,25459875-25459950,
           25460775-25460885,25461194-25461371,25462340-25462434
          Length = 1557

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +2

Query: 686 ENDEKEFNDLITKNFMSRIMEVGSPVPKQVYSSGGSNK 799
           END +EF +    N + +   V       +   GGSNK
Sbjct: 121 ENDMREFEEFYNSNSVEKFPRVFGMTASPIIGKGGSNK 158


>03_06_0156 +
           32035503-32035769,32036436-32036539,32036734-32036844,
           32036923-32037073,32037614-32037888,32037998-32038211
          Length = 373

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -2

Query: 209 HDIYF-LGSSWPAVTFNGDVLLKNTPQNCCSVRG 111
           +D Y  L S+W     N D+L  N P+N CS  G
Sbjct: 315 YDNYLKLPSNWKRADANSDILNYNGPKNVCSEGG 348


>02_05_0183 +
           26537676-26537752,26538481-26538649,26538736-26538910,
           26539008-26539137,26540425-26540558,26540629-26540771,
           26540894-26541092,26541183-26541514
          Length = 452

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
 Frame = +2

Query: 608 QPIVF---TDSKPDLLTKEIIHLNEMETDENDEKEFNDLITKNFMS 736
           Q IVF    D  PD +T +I+ + +++     +++F+DL T++ +S
Sbjct: 265 QKIVFQGEADEAPDTVTGDIVFVLQLKDHPKFKRKFDDLFTEHTIS 310


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,463,269
Number of Sequences: 37544
Number of extensions: 467044
Number of successful extensions: 1027
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)