Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_M16
         (390 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8HMZ5 Cluster: Orf333; n=2; Schizosaccharomyces japoni...    33   2.6  
UniRef50_Q25809 Cluster: Rps3 protein; n=2; Plasmodium|Rep: Rps3...    31   7.9  

>UniRef50_Q8HMZ5 Cluster: Orf333; n=2; Schizosaccharomyces
           japonicus|Rep: Orf333 - Schizosaccharomyces japonicus
           (Fission yeast)
          Length = 333

 Score = 32.7 bits (71), Expect = 2.6
 Identities = 21/64 (32%), Positives = 33/64 (51%)
 Frame = +3

Query: 90  LSTIYFNYNSF*XEALFLFKYFFINLSFISYVILNVKQMNIII*LVTCLEIRLLN*MRYF 269
           +S+IY + NS+       F  +F    FISY  +N K       LV  LE + +N + YF
Sbjct: 193 ISSIYSHNNSYIPNNSSWFAGYFDTKGFISYSFINNKPQ-----LVISLEDKSINNVNYF 247

Query: 270 LNKY 281
           +N++
Sbjct: 248 VNRF 251


>UniRef50_Q25809 Cluster: Rps3 protein; n=2; Plasmodium|Rep: Rps3
           protein - Plasmodium falciparum
          Length = 214

 Score = 31.1 bits (67), Expect = 7.9
 Identities = 18/70 (25%), Positives = 31/70 (44%)
 Frame = +3

Query: 75  F*IXSLSTIYFNYNSF*XEALFLFKYFFINLSFISYVILNVKQMNIII*LVTCLEIRLLN 254
           F I      +F YN +    ++  KY FI L++ +Y   N       + +     I  +N
Sbjct: 64  FSINKFVITFFLYNKY--YNIYNLKYIFILLNYFNYYYYNYYNYMCFLKIKYVNNINNIN 121

Query: 255 *MRYFLNKYY 284
            + Y++ KYY
Sbjct: 122 VIMYYIKKYY 131


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,762,811
Number of Sequences: 1657284
Number of extensions: 2050601
Number of successful extensions: 4586
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4583
length of database: 575,637,011
effective HSP length: 91
effective length of database: 424,824,167
effective search space used: 16143318346
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)