Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_M13
         (365 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein S25|Schizosacc...    87   6e-19
SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein S25|Sc...    86   2e-18
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po...    26   1.6  
SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomy...    26   2.1  
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa...    26   2.1  
SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyc...    25   2.8  
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    25   4.9  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    24   6.4  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    24   6.4  
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy...    24   8.5  
SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyce...    24   8.5  

>SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein
           S25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 88

 Score = 87.4 bits (207), Expect = 6e-19
 Identities = 39/78 (50%), Positives = 58/78 (74%)
 Frame = +3

Query: 6   WSKGKVRDKLNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREK 185
           WSKGKV+DK  +  +FDK   +++ KEVP +K I+ +V+ +R+K+ GSLAR A+ +L E+
Sbjct: 7   WSKGKVKDKAQHATVFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDLAER 66

Query: 186 GLIKQVVQHHGQVIYTRA 239
           G+I++V QH  Q IYTRA
Sbjct: 67  GVIQKVDQHSKQAIYTRA 84


>SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein
           S25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score = 85.8 bits (203), Expect = 2e-18
 Identities = 38/77 (49%), Positives = 57/77 (74%)
 Frame = +3

Query: 6   WSKGKVRDKLNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREK 185
           WSKGKV+DK  +  +FDK   +++ KEVP +K I+ +V+ +R+K+ GSLAR A+ +L E+
Sbjct: 7   WSKGKVKDKAQHATVFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDLAER 66

Query: 186 GLIKQVVQHHGQVIYTR 236
           G+I++V QH  Q IYTR
Sbjct: 67  GVIQKVDQHSKQAIYTR 83


>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 212 MLDYLFDETFFPKLDECSSR 153
           M D LF E+F  +LD C  R
Sbjct: 682 MADELFSESFLSRLDNCEKR 701


>SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 613

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
 Frame = -2

Query: 184 FSLSSMSALLAREPRTFN--LSDTTAGVISLYCGTSLYSFSYVGLSNNT---WLFNLSRT 20
           F  S M+ +  +    FN  LSD    VIS   G + Y F  V LS+ T   W  N +  
Sbjct: 203 FYSSIMNEVAEKANAGFNISLSDYWGRVISRTLGDTTYGFPNVSLSSITSQEWYRNANFP 262

Query: 19  FPL 11
           +P+
Sbjct: 263 YPI 265


>SPAC2G11.13 |atg22||autophagy associated protein Atg22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 22/85 (25%), Positives = 38/85 (44%)
 Frame = -2

Query: 271 IVYATGSSPLVARV*ITCP*CWTTCLMRPFSLSSMSALLAREPRTFNLSDTTAGVISLYC 92
           I+Y T ++P++  + +T   CW   L  P  L ++  L    P   + SD    ++    
Sbjct: 260 ILYKTNNNPIILPITVTVCSCWWLILSTP--LCTIVTL----PVENHSSDAILTLLYNSV 313

Query: 91  GTSLYSFSYVGLSNNTWLFNLSRTF 17
             S +SF +    ++  LF  SR F
Sbjct: 314 KESYHSFKHAMSISSIRLFLFSRLF 338


>SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 572

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 6   WSKGKVRDKLNNQVLFDKPTYEKLYKEVPQYKLI 107
           W+ G+V    +NQ L  KP Y   Y + P  KLI
Sbjct: 424 WTLGQVLLYASNQQLLAKPEYANYYMD-PYGKLI 456


>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
           Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +3

Query: 123 SERLKVRGSLARRALIELREKGLIKQVVQHHGQVIY 230
           +ERL +  ++ R AL+EL++  LIKQ      QV++
Sbjct: 185 NERLNL-DTIKRNALVELKKLRLIKQQESLRHQVMH 219


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = -2

Query: 175  SSMSALLAREPRTFNLSDTTAGVISLYCGTSLYSFSYVGLSNNT--WLFNLSRTFP 14
            S+ S  L+ EP+TF+ S T +  IS     SL       LS++T   L + S T P
Sbjct: 946  SASSNTLSTEPKTFSSSSTLSESISSINTNSLTVKPESSLSSSTTSGLTSSSSTIP 1001


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
            Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +3

Query: 129  RLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRATKGDD 254
            R   RG++  R +I  +EK  +++VV   G+   TR TK  D
Sbjct: 1551 RFITRGTIEERIVIRAKEKEEVQKVVISGGE---TRPTKQMD 1589


>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 245

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 63  TYEKLYKEVPQYKLITPAVVS 125
           TY+K+Y E P  K++   + S
Sbjct: 96  TYKKIYNEYPPTKILVQEIAS 116


>SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 462

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 15  GKVRDKLNNQVLFDKPTYEKLYKEVPQYKLITPAVV 122
           G+   KLN     +K   E   + +P+ KL+TPA++
Sbjct: 232 GEKARKLNKSEKTNKYHTEWNLEHIPRLKLVTPALM 267


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,212,143
Number of Sequences: 5004
Number of extensions: 21702
Number of successful extensions: 80
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)