Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_F_M13
(365 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41558-4|AAK39246.1| 117|Caenorhabditis elegans Ribosomal prote... 132 7e-32
U00048-11|AAB53833.1| 995|Caenorhabditis elegans Hypothetical p... 28 1.8
AF016428-2|AAO26002.1| 316|Caenorhabditis elegans Serpentine re... 27 3.1
AC024776-7|AAK68469.1| 411|Caenorhabditis elegans Nuclear pore ... 27 3.1
AC024776-5|AAK68470.3| 1090|Caenorhabditis elegans Nuclear pore ... 27 3.1
Z81085-3|CAB03115.1| 769|Caenorhabditis elegans Hypothetical pr... 27 5.4
AL117195-21|CAB55033.2| 313|Caenorhabditis elegans Hypothetical... 26 7.2
AF024492-4|AAF98617.1| 848|Caenorhabditis elegans Hypothetical ... 26 7.2
Z79605-6|CAB01906.3| 323|Caenorhabditis elegans Hypothetical pr... 26 9.5
AF016449-12|AAG24004.2| 365|Caenorhabditis elegans Serpentine r... 26 9.5
>U41558-4|AAK39246.1| 117|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 25 protein.
Length = 117
Score = 132 bits (319), Expect = 7e-32
Identities = 63/85 (74%), Positives = 71/85 (83%)
Frame = +3
Query: 6 WSKGKVRDKLNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREK 185
WSKGKVRDKLNN VLFD+ TY+KLYKEV YKLITP+VVSERLKVR SLA+ L EL+ K
Sbjct: 31 WSKGKVRDKLNNMVLFDQATYDKLYKEVITYKLITPSVVSERLKVRASLAKAGLKELQAK 90
Query: 186 GLIKQVVQHHGQVIYTRATKGDDPV 260
GL+K VV HHGQV+YTRATK D +
Sbjct: 91 GLVKCVVHHHGQVVYTRATKEADVI 115
>U00048-11|AAB53833.1| 995|Caenorhabditis elegans Hypothetical
protein C05D11.1 protein.
Length = 995
Score = 28.3 bits (60), Expect = 1.8
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +3
Query: 21 VRDKLNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERL-KVRGSL 152
V K N +LFD+ EKL++++ + + P V E+L +VR +L
Sbjct: 688 VYGKNTNCILFDELVLEKLHEKISKDVMKNPEAVLEKLEQVRSAL 732
>AF016428-2|AAO26002.1| 316|Caenorhabditis elegans Serpentine
receptor, class g (gamma)protein 65 protein.
Length = 316
Score = 27.5 bits (58), Expect = 3.1
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -2
Query: 172 SMSALLAREPRTFNLSDTTAGVISLYCG 89
S++ ++ E F+LSDT ++ L+CG
Sbjct: 2 SVNRTISLENGKFDLSDTIVNIVELFCG 29
>AC024776-7|AAK68469.1| 411|Caenorhabditis elegans Nuclear pore
complex protein protein8, isoform a protein.
Length = 411
Score = 27.5 bits (58), Expect = 3.1
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -2
Query: 181 SLSSMSALLAREPRTFNLSDTTAGVISLYCGTSLYSFSYVGLSNNT 44
S++S+ AL A + NL TTA + LY S S + + NN+
Sbjct: 313 SITSIKALEASQSAALNLVATTAKGVRLYFSVSTGPQSTMAMFNNS 358
>AC024776-5|AAK68470.3| 1090|Caenorhabditis elegans Nuclear pore
complex protein protein8, isoform b protein.
Length = 1090
Score = 27.5 bits (58), Expect = 3.1
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -2
Query: 181 SLSSMSALLAREPRTFNLSDTTAGVISLYCGTSLYSFSYVGLSNNT 44
S++S+ AL A + NL TTA + LY S S + + NN+
Sbjct: 228 SITSIKALEASQSAALNLVATTAKGVRLYFSVSTGPQSTMAMFNNS 273
>Z81085-3|CAB03115.1| 769|Caenorhabditis elegans Hypothetical
protein F46F3.4 protein.
Length = 769
Score = 26.6 bits (56), Expect = 5.4
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +3
Query: 132 LKVRGSLARRALIELREKGLIKQVVQHHGQVIYTR 236
L V+GS+ + A +ELR + Q + H + +Y R
Sbjct: 191 LNVQGSMLKEAQLELRNASMRAQSLNKHLEEMYRR 225
>AL117195-21|CAB55033.2| 313|Caenorhabditis elegans Hypothetical
protein Y57A10A.28 protein.
Length = 313
Score = 26.2 bits (55), Expect = 7.2
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -2
Query: 211 CWTTCLMRPFSLSSMSALLAREP 143
CW +C++ F+ S +S L EP
Sbjct: 62 CWLSCMLMSFAGSFLSCFLLGEP 84
>AF024492-4|AAF98617.1| 848|Caenorhabditis elegans Hypothetical
protein F14F9.3 protein.
Length = 848
Score = 26.2 bits (55), Expect = 7.2
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 27 DKLNNQVLFDKPTYEKLYKEVPQYK 101
++L NQVLFDKP EK + ++K
Sbjct: 32 EELANQVLFDKPRGEKRWLGKERHK 56
>Z79605-6|CAB01906.3| 323|Caenorhabditis elegans Hypothetical
protein ZK678.4 protein.
Length = 323
Score = 25.8 bits (54), Expect = 9.5
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +3
Query: 63 TYEKLYKEVPQYKLITP-AVVSERLKVRGSLARRALIELRE 182
TYE + K ++K ITP AV + + ARR LI +R+
Sbjct: 184 TYEMIKKVFSKHKTITPFAVPLQNTTLSKLQARRDLIMMRQ 224
>AF016449-12|AAG24004.2| 365|Caenorhabditis elegans Serpentine
receptor, class t protein71 protein.
Length = 365
Score = 25.8 bits (54), Expect = 9.5
Identities = 15/54 (27%), Positives = 22/54 (40%)
Frame = -2
Query: 184 FSLSSMSALLAREPRTFNLSDTTAGVISLYCGTSLYSFSYVGLSNNTWLFNLSR 23
F L+ L +P T N +LYC S + G S ++WL+ R
Sbjct: 142 FLLNFQPELYECQPDTINNIVLVLCTSTLYCYISYHLLFNFGYSTSSWLYKSKR 195
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,801,718
Number of Sequences: 27780
Number of extensions: 130648
Number of successful extensions: 370
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 370
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 514188384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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