Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_M08
         (872 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    29   0.86 
SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces p...    27   4.6  
SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element Wtf21|Sc...    26   8.1  
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy...    26   8.1  
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac...    26   8.1  

>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 29.1 bits (62), Expect = 0.86
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 634  IWNMCCRSHYYISTIFSKQ 578
            +W   CRSHY+IS + S Q
Sbjct: 1003 VWYRECRSHYFISPVLSNQ 1021


>SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 612

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 13/60 (21%), Positives = 26/60 (43%)
 Frame = +2

Query: 110 CTEKIVPRKIKPQNIVIRLMEREIHGSRKPGSHFHVVREFYQNVFPNLTIVNVEKPPCFL 289
           CT +++   I+P  I I L    +  +R      +   ++Y   F     ++ + PPC +
Sbjct: 433 CTRRLLAVIIEPSIIYICLKNSAVQSNRNVSPSANHNEQWYLVRFTTSATISQDSPPCIV 492


>SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element
           Wtf21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 329

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +3

Query: 702 LWKIIHFI*LTYIKGNFVILN-ILXSTKFTYHTIXVFIYTKKCLLF 836
           LW II  I   YIK   +ILN  L  +  T   + + I +  C+ F
Sbjct: 170 LWLIICCILFVYIKSGDLILNKALICSTCTISAVLLLIVSSVCIPF 215


>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1010

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 28/102 (27%), Positives = 44/102 (43%)
 Frame = -2

Query: 571 FSVELLLHHRHVTKTIRSDISLLTNIHCKLRLKESIKYMCSNSVMSISICIKQVSWITSH 392
           F + L  HH  V  T ++   L+ +I    +LKE ++    N  MS S    Q + +T+ 
Sbjct: 455 FFLNLAFHHYGVNATFKALEQLVQSIRDSEKLKERLETEQQN--MSGSF---QATRLTAQ 509

Query: 391 *VSCTRSTSVFIDLQRSLIS*ECYEMFTIWTKLPQKARRFLN 266
                      +DL RS +   CYE+    T    ++  FLN
Sbjct: 510 ----LSRLDQRLDLDRSFV--HCYEIMLTQTSDTSRSFSFLN 545


>SPAC630.14c |tup12||transcriptional corepressor Tup12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 586

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = +2

Query: 296 FSPDGKHFIAFSADQTSLEIYEYRGASS 379
           FSPDGK+ ++ S D T ++++E +  S+
Sbjct: 466 FSPDGKYLVSGSLDNT-IKLWELQCVSN 492


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,626,086
Number of Sequences: 5004
Number of extensions: 77862
Number of successful extensions: 222
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)