Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_M08
         (872 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21791| Best HMM Match : V-set (HMM E-Value=1.4)                    257   1e-68
SB_43403| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.057
SB_40319| Best HMM Match : RecX (HMM E-Value=1.9)                      31   1.6  
SB_25899| Best HMM Match : Ribonuc_2-5A (HMM E-Value=0)                30   2.1  
SB_22517| Best HMM Match : UPF0081 (HMM E-Value=1)                     30   2.8  
SB_22476| Best HMM Match : Keratin_B2 (HMM E-Value=0.41)               29   6.6  

>SB_21791| Best HMM Match : V-set (HMM E-Value=1.4)
          Length = 474

 Score =  257 bits (629), Expect = 1e-68
 Identities = 127/248 (51%), Positives = 173/248 (69%)
 Frame = +2

Query: 128 PRKIKPQNIVIRLMEREIHGSRKPGSHFHVVREFYQNVFPNLTIVNVEKPPCFLRKFSPD 307
           PR++  QNIV ++ +RE    R PG  +H  R F QN+FPN TIVNVEKPPCFLRKFSPD
Sbjct: 8   PRRVTNQNIVWKIRQRETVAPR-PGCRWHRGRSFTQNLFPNFTIVNVEKPPCFLRKFSPD 66

Query: 308 GKHFIAFSADQTSLEIYEYRGASSAGDLVAGYPTDLLNADADAHHRIRTHIFYRFFKPKF 487
           G++F+AFS DQ+S+E+YE++GAS+A +L+A         +      IR+ +F  FFK   
Sbjct: 67  GRYFVAFSLDQSSIEVYEFQGASAAEELLA--------REGHQTASIRSKLFGEFFKQTA 118

Query: 488 TVNVCQQRDIRSDRLGNMPVMEQQLNRECSLFTEDGRYVIVGSAAHIPDDLRPHFYHIHS 667
            V V    +               LNRECSLFT+DGRYVIVGSA+++P+D  P F+ I+ 
Sbjct: 119 VVTVAANGE--------------HLNRECSLFTDDGRYVIVGSASYVPEDPHPFFFDIYR 164

Query: 668 NNEAVTPTIRSPLEDYSLHLVDLHQGKLCDTKHFXIDKIYLSHNXGIYLYKEVLAVLSVQ 847
           NNE+V+P  RSPLEDY++H+VDL +G+L D++ F  DKI+LSHN G+YLY+++LA+LSVQ
Sbjct: 165 NNESVSPNPRSPLEDYTIHIVDLRKGRLSDSRTFKCDKIFLSHNQGLYLYRDLLAILSVQ 224

Query: 848 HQTIXLYQ 871
            QTI ++Q
Sbjct: 225 QQTIHIFQ 232


>SB_43403| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 35.5 bits (78), Expect = 0.057
 Identities = 15/39 (38%), Positives = 27/39 (69%)
 Frame = +2

Query: 248 NLTIVNVEKPPCFLRKFSPDGKHFIAFSADQTSLEIYEY 364
           N+ +V+ + PP    KFSP+GK+ +A + D T L++++Y
Sbjct: 114 NVDLVDDDNPPVSFVKFSPNGKYILAATLDNT-LKLWDY 151


>SB_40319| Best HMM Match : RecX (HMM E-Value=1.9)
          Length = 249

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +2

Query: 425 DADAHHRIRTHIFYRFFKPKFTVNVCQQRDIRSDRLGNMPVMEQ 556
           +++A  ++ T + Y  F     V +C QRD+R  RL N P  E+
Sbjct: 205 ESEATDKVYTVVLYGEFNNNMEV-LCSQRDVRHSRLKNPPPAEK 247


>SB_25899| Best HMM Match : Ribonuc_2-5A (HMM E-Value=0)
          Length = 603

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +2

Query: 587 EDGRYVIVGSAAHIPDDLRPHFYHIHSNNEAVTPTIRSP 703
           E+G  ++     HIPD L P + + H++N   +PT  +P
Sbjct: 73  EEGSPLVELQMTHIPDKLMPFYMNHHTHNPNNSPTPPTP 111


>SB_22517| Best HMM Match : UPF0081 (HMM E-Value=1)
          Length = 2568

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 359  EYRGASSAGDLVAGYPTDLLNADAD 433
            EYRG S+ GD ++G P DL +   D
Sbjct: 1766 EYRGVSAFGDRISGLPVDLHSTRVD 1790


>SB_22476| Best HMM Match : Keratin_B2 (HMM E-Value=0.41)
          Length = 269

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -2

Query: 625 MCCRSHYYISTIFSKQAAFSVELLLHHRHVTKTIRS 518
           MC +  YY  T+ +K A ++  +   H   T+T+R+
Sbjct: 134 MCTKHAYYTQTMCTKHAGYTQTMRTKHADCTQTMRT 169


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,695,875
Number of Sequences: 59808
Number of extensions: 562854
Number of successful extensions: 1411
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1410
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2503194881
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)