Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_M08
         (872 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        24   2.1  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        24   2.1  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        24   2.1  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          23   3.7  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   4.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   8.5  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -3

Query: 651 KCGLKSSGICAADPTITYLPSSVNKLHS 568
           K G K + + A DP   YL    NKL S
Sbjct: 74  KVGKKEADVVAVDPEDMYLAVKDNKLAS 101


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -3

Query: 651 KCGLKSSGICAADPTITYLPSSVNKLHS 568
           K G K + + A DP   YL    NKL S
Sbjct: 74  KVGKKEADVVAVDPEDMYLAVKDNKLAS 101


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -3

Query: 651 KCGLKSSGICAADPTITYLPSSVNKLHS 568
           K G K + + A DP   YL    NKL S
Sbjct: 74  KVGKKEADVVAVDPEDMYLAVKDNKLAS 101


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 6/19 (31%), Positives = 14/19 (73%)
 Frame = -1

Query: 671 CYCECDKNVVSSHLEYVLQ 615
           CYC C+K  ++++ + V++
Sbjct: 2   CYCTCEKCKITANRQQVMR 20


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +1

Query: 46  SFEIYLLXGPSTRSNRRKGILLHRKNCTSKNKTS 147
           S + Y+L GP     +RK   +  ++ T  N +S
Sbjct: 202 STKSYVLEGPRNGKRKRKSSTIENESETESNASS 235


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +2

Query: 440 HRIRTHIFYRFFKPKFTVNVCQQRDIRSDRL 532
           + + THI  R FK  F + +   R+   DR+
Sbjct: 344 YNMLTHIDARMFKDLFFLQILDLRNNSIDRI 374


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 242,627
Number of Sequences: 438
Number of extensions: 5507
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28280841
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)