Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_M04
         (849 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    24   1.7  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    23   2.3  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       23   4.0  
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    21   9.3  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    21   9.3  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 29/129 (22%), Positives = 55/129 (42%), Gaps = 5/129 (3%)
 Frame = +3

Query: 222 GITGEPSEXXXXXXXXXXXXXPGLNKYTGLPHSQRYHELLRKRLGLPVWE---YKNDFMR 392
           G T  P+                +N +  +  S+     L KR   PV +    KN F  
Sbjct: 41  GTTSHPTSKLVPPDERITYSWTEINAFANVSPSKTKFFNLIKRKDSPVQKKHILKNVF-G 99

Query: 393 LLNTHQCIVLVGETGSGKTTQIPQWSVEFAAVSGLGKAKGVACTQPRRVAAMSVAQRVA- 569
           +    + + ++G +G+GKTT +   ++ F   S L    G+ C     V++ ++A + A 
Sbjct: 100 VAYPGELLAILGSSGAGKTTLLN--TLTFHTSSNL-TVSGLRCVNGIPVSSKTLASQSAY 156

Query: 570 -EEMDVALG 593
            ++ D+ +G
Sbjct: 157 VQQDDLFIG 165


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 16/64 (25%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
 Frame = +3

Query: 408 QCIVLVGETGSGKTTQIPQWSVEFAAVSGLGKAKGVACTQPRRVAAMSVAQRVA--EEMD 581
           + + ++G +G+GKTT +   ++ F   S L    G+ C     V++ ++A + A  ++ D
Sbjct: 105 ELLAILGSSGAGKTTLLN--TLTFHTSSNL-TVSGLRCVNGIPVSSKTLASQSAYVQQDD 161

Query: 582 VALG 593
           + +G
Sbjct: 162 LFIG 165


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -2

Query: 767 QDIRCKCPFVGFIEEYNXILX*HWVRHS 684
           +D R  CP   FI EY   L  H   H+
Sbjct: 227 EDKRLTCPKCPFITEYKHHLEYHLRNHA 254



 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 285 PGLNKYTGLPHSQRYHELLRKR 350
           PG   + G P++Q   +L+R+R
Sbjct: 366 PGYPFFGGFPNAQLLQQLIRER 387


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +1

Query: 526 NQDEWLLCLLLRG 564
           N+  WL CLLL G
Sbjct: 3   NKTYWLCCLLLLG 15


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +1

Query: 526 NQDEWLLCLLLRG 564
           N+  WL CLLL G
Sbjct: 3   NKTYWLCCLLLLG 15


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,701
Number of Sequences: 336
Number of extensions: 4489
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23451794
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)