Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_F_M04
(849 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc... 233 3e-62
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 199 5e-52
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 192 7e-50
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 182 4e-47
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 179 4e-46
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 157 1e-39
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 142 4e-35
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 142 7e-35
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 108 1e-24
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 30 0.48
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 29 1.1
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 28 1.5
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 27 2.5
SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces pomb... 26 5.9
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc... 26 7.8
>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
Prp43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 233 bits (569), Expect = 3e-62
Identities = 115/185 (62%), Positives = 146/185 (78%)
Frame = +3
Query: 294 NKYTGLPHSQRYHELLRKRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSV 473
N + P SQ Y ++L R LPV++ + +F+++ + +Q IV VGETGSGKTTQIPQ+ V
Sbjct: 54 NFFNDKPFSQNYFKILETRRELPVYQQREEFLKIYHENQIIVFVGETGSGKTTQIPQF-V 112
Query: 474 EFAAVSGLGKAKGVACTQPRRVAAMSVAQRVAEEMDVALGQEVGYSIRFEDCSGPQTLLK 653
+ + L + +ACTQPRRVAAMSVA+RVA+EMDV LG+EVGY+IRFEDCSGP TLLK
Sbjct: 113 LYDELPHLTNTQ-IACTQPRRVAAMSVAKRVADEMDVDLGEEVGYNIRFEDCSGPNTLLK 171
Query: 654 YMTDGMLLREAMSDPMLXQYXVILLDEAHERTLATDILMGVLKXVIKQRSDLKLVIMSAT 833
YMTDGMLLREAM+D ML +Y I+LDEAHERTLATDILMG++K + +R DLK+++MSAT
Sbjct: 172 YMTDGMLLREAMTDHMLSRYSCIILDEAHERTLATDILMGLMKRLATRRPDLKIIVMSAT 231
Query: 834 LXAGK 848
L A K
Sbjct: 232 LDAKK 236
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 199 bits (485), Expect = 5e-52
Identities = 96/167 (57%), Positives = 128/167 (76%)
Frame = +3
Query: 348 RLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSVEFAAVSGLGKAKGVACTQ 527
R LPV++YK+D ++ +N +Q +++V ETGSGKTTQ+PQ+ E G K + CTQ
Sbjct: 415 RKSLPVYQYKDDLLKAINEYQVLLIVAETGSGKTTQLPQFLHEAGYTKG---NKKICCTQ 471
Query: 528 PRRVAAMSVAQRVAEEMDVALGQEVGYSIRFEDCSGPQTLLKYMTDGMLLREAMSDPMLX 707
PRRVAAMSVA RVA+EMDV LGQEVGYSIRFE+ + +T++KY+TDGMLLRE +++P L
Sbjct: 472 PRRVAAMSVAARVAKEMDVRLGQEVGYSIRFENATSEKTVIKYLTDGMLLREFLTEPDLA 531
Query: 708 QYXVILLDEAHERTLATDILMGVLKXVIKQRSDLKLVIMSATLXAGK 848
Y VI++DEAHERTL TDIL G++K + + R DLK++I SAT+ A K
Sbjct: 532 SYSVIIIDEAHERTLHTDILFGLVKDIARFRPDLKVLISSATIDAEK 578
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 192 bits (467), Expect = 7e-50
Identities = 94/166 (56%), Positives = 125/166 (75%)
Frame = +3
Query: 345 KRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSVEFAAVSGLGKAKGVACT 524
+R GLPV++ + F+ ++ +Q +VL+GETGSGKTTQI Q+ E S +K + CT
Sbjct: 506 QREGLPVFKLRKQFLEAVSKNQILVLLGETGSGKTTQITQYLAEEGYTSD---SKMIGCT 562
Query: 525 QPRRVAAMSVAQRVAEEMDVALGQEVGYSIRFEDCSGPQTLLKYMTDGMLLREAMSDPML 704
QPRRVAAMSVA+RVAEE+ +G+EVGY+IRFED + T +KYMTDGML RE + DP+L
Sbjct: 563 QPRRVAAMSVAKRVAEEVGCRVGEEVGYTIRFEDKTSRMTQIKYMTDGMLQRECLVDPLL 622
Query: 705 XQYXVILLDEAHERTLATDILMGVLKXVIKQRSDLKLVIMSATLXA 842
+Y VI+LDEAHERT+ATD+L G+LK + +R DLKL++ SATL A
Sbjct: 623 SKYSVIILDEAHERTVATDVLFGLLKGTVLKRPDLKLIVTSATLDA 668
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 182 bits (444), Expect = 4e-47
Identities = 93/184 (50%), Positives = 129/184 (70%)
Frame = +3
Query: 297 KYTGLPHSQRYHELLRKRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSVE 476
K T ++ Y E +R LP + + + ++ +Q +++VGETGSGKTTQ+ Q+ E
Sbjct: 475 KDTEFARTKSYRE---QREFLPAFAVREQLLSVIRDNQVLIVVGETGSGKTTQLAQFLYE 531
Query: 477 FAAVSGLGKAKGVACTQPRRVAAMSVAQRVAEEMDVALGQEVGYSIRFEDCSGPQTLLKY 656
G + + CTQPRRVAAMSVA+RV+EEM V LG VGYSIRFED +GP T++KY
Sbjct: 532 ----DGYHRNGMIGCTQPRRVAAMSVAKRVSEEMGVRLGSTVGYSIRFEDVTGPDTVIKY 587
Query: 657 MTDGMLLREAMSDPMLXQYXVILLDEAHERTLATDILMGVLKXVIKQRSDLKLVIMSATL 836
MTDG+LLRE++ L +Y VI++DEAHER+L TDILMG+LK V+ +R D+KL++ SAT+
Sbjct: 588 MTDGVLLRESLMQNNLEKYSVIIMDEAHERSLNTDILMGLLKKVLSRRRDIKLLVTSATM 647
Query: 837 XAGK 848
+ K
Sbjct: 648 NSQK 651
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 179 bits (436), Expect = 4e-46
Identities = 88/170 (51%), Positives = 125/170 (73%)
Frame = +3
Query: 333 ELLRKRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSVEFAAVSGLGKAKG 512
++L +R LP+WE + + + ++ IV+VGETGSGK+TQIPQ+ E +
Sbjct: 88 DILEQRKNLPIWEAHDTLCQQIQDNRVIVVVGETGSGKSTQIPQFLNECP----YAQEGC 143
Query: 513 VACTQPRRVAAMSVAQRVAEEMDVALGQEVGYSIRFEDCSGPQTLLKYMTDGMLLREAMS 692
VA TQPRRVAA+++A+RVA E LG++VGYSIRF+D + +T +KY+TDGMLLRE ++
Sbjct: 144 VAITQPRRVAAVNLAKRVAAEQGCRLGEQVGYSIRFDDTTSKKTRIKYLTDGMLLRELIN 203
Query: 693 DPMLXQYXVILLDEAHERTLATDILMGVLKXVIKQRSDLKLVIMSATLXA 842
DP+L QY ++LDEAHERTL TD+L+G +K +IK+R L+++IMSATL A
Sbjct: 204 DPILSQYHTLILDEAHERTLMTDMLLGFVKKIIKKRPALRVIIMSATLNA 253
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 157 bits (382), Expect = 1e-39
Identities = 76/170 (44%), Positives = 118/170 (69%)
Frame = +3
Query: 339 LRKRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSVEFAAVSGLGKAKGVA 518
++K+L LP+ +Y+N + + +Q +++G TG GKTTQIPQ+ E S G +
Sbjct: 20 IQKKL-LPITKYRNQLLYAVEQNQITIVLGHTGCGKTTQIPQFLYEAGWASQNGI---IG 75
Query: 519 CTQPRRVAAMSVAQRVAEEMDVALGQEVGYSIRFEDCSGPQTLLKYMTDGMLLREAMSDP 698
CTQPRR+ A SV++RV+ E++ G GYSI+F+ +T +KYMTDG+LL E DP
Sbjct: 76 CTQPRRLVAKSVSERVSLELNSPPGSLCGYSIQFDHNVSEKTKIKYMTDGILLNEIFFDP 135
Query: 699 MLXQYXVILLDEAHERTLATDILMGVLKXVIKQRSDLKLVIMSATLXAGK 848
+L +Y +++LDE HERTL+TD+L+GVLK ++++R+D +LV+ SA++ A K
Sbjct: 136 LLERYSIVILDEVHERTLSTDLLLGVLKRILEKRNDFRLVLSSASVDANK 185
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 142 bits (345), Expect = 4e-35
Identities = 77/179 (43%), Positives = 112/179 (62%), Gaps = 11/179 (6%)
Frame = +3
Query: 333 ELLRKRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSVEFAAVSGLGKAKG 512
E+ RL LP+ + M + + +++ G TGSGKTTQ+PQ+ E S + G
Sbjct: 390 EIQESRLALPIVAEEQRIMEQIFANDVVIICGATGSGKTTQLPQFLFEAGFSSPESENPG 449
Query: 513 -VACTQPRRVAAMSVAQRVAEEMDVALGQEVGYSIRFEDCSGPQTLLKYMTDGMLLREAM 689
+A TQPRRVAA+S+A+RV+EE+ +V Y IRF+ P T +K+MTDG+LLRE
Sbjct: 450 MIAITQPRRVAAVSIAKRVSEEL-TGFSSKVSYQIRFDSTINPDTAIKFMTDGILLRELS 508
Query: 690 SDPMLXQYXVILLDEAHERTLATDILMGVLKXVIKQRSD----------LKLVIMSATL 836
SD +L Y +++DEAHER++ TDIL+G+L +++ R + LKL+IMSATL
Sbjct: 509 SDFLLTAYSAVIVDEAHERSVNTDILLGLLSRIVRLRREMSKSDQKVKPLKLIIMSATL 567
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 142 bits (343), Expect = 7e-35
Identities = 73/183 (39%), Positives = 113/183 (61%), Gaps = 2/183 (1%)
Frame = +3
Query: 294 NKYTGLPHSQRYHELLRKRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSV 473
N ++ S Y +R+R LP WE + M + Q +V+ GETGSGK+TQ+ Q+ +
Sbjct: 556 NNWSERVKSPSYQLKVREREKLPAWESRRKIMDAIQHSQVVVISGETGSGKSTQVVQFIL 615
Query: 474 EFAAVSGLGKAKGVACTQPRRVAAMSVAQRVAEEMDVALGQEVGYSIRFEDCSGPQTLLK 653
+ SG + V CTQPRR++A+S+A+RVA E D +G+EVGYS+ E +TLL+
Sbjct: 616 DHYLSSGEKDLQTVVCTQPRRISAISLAERVAFERDTTVGKEVGYSVHGEKSISKETLLE 675
Query: 654 YMTDGMLLREAMSDPM--LXQYXVILLDEAHERTLATDILMGVLKXVIKQRSDLKLVIMS 827
+ T G+LLR + L +++DE HER++ DIL+ +LK VI + +LK+++MS
Sbjct: 676 FCTTGLLLRRIQQHGLGFLSTLSCVVVDEVHERSIENDILLTLLKLVISRIPNLKVILMS 735
Query: 828 ATL 836
AT+
Sbjct: 736 ATV 738
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 108 bits (259), Expect = 1e-24
Identities = 66/191 (34%), Positives = 108/191 (56%), Gaps = 5/191 (2%)
Frame = +3
Query: 291 LNKYTGLPHSQRYHELLRKRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWS 470
LNK+ S+ + R LP ++ + +N Q +++ G+TG GK+TQIP +
Sbjct: 609 LNKWRQQLESESAEKFKVFRNQLPATMFRETIIDAVNNSQLLIISGDTGCGKSTQIPAFL 668
Query: 471 VEFAAVSGLGKAKGVACTQPRRVAAMSVAQRVAEEMD----VALGQE-VGYSIRFEDCSG 635
+E + +G KA + T+PRR++A+S+A RV++E+ A E VGYS+R +
Sbjct: 669 LENSTKNG--KAVKIYVTEPRRISAISLANRVSQELGGNPPSARSHELVGYSVRLDSKCT 726
Query: 636 PQTLLKYMTDGMLLREAMSDPMLXQYXVILLDEAHERTLATDILMGVLKXVIKQRSDLKL 815
P T L Y+T G LR + +++DE HER++ +D+L+ + ++KQ LK+
Sbjct: 727 PLTPLTYVTTGTFLRLLEVGNEIESVTHLIIDEVHERSIDSDLLLIHVLHLLKQHPHLKI 786
Query: 816 VIMSATLXAGK 848
+IMSATL A K
Sbjct: 787 IIMSATLNAEK 797
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 29.9 bits (64), Expect = 0.48
Identities = 12/21 (57%), Positives = 18/21 (85%)
Frame = +3
Query: 396 LNTHQCIVLVGETGSGKTTQI 458
+ T++ ++LVGETG+GKTT I
Sbjct: 464 VQTNEPLLLVGETGTGKTTTI 484
Score = 25.8 bits (54), Expect = 7.8
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 390 RLLNTHQCIVLVGETGSGKTT 452
R L + ++LVG+TG GKTT
Sbjct: 1181 RCLLAKEPVLLVGDTGCGKTT 1201
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 28.7 bits (61), Expect = 1.1
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = +3
Query: 387 MRLLNTHQCIVLVGETGSGKT 449
M+ + +QCI++ GE+G+GKT
Sbjct: 120 MKSYHENQCIIISGESGAGKT 140
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 28.3 bits (60), Expect = 1.5
Identities = 14/54 (25%), Positives = 29/54 (53%)
Frame = -3
Query: 817 TSFKSDLCFMTXLRTPIRISVASVLSWASSRSITXYCXSIGSDIASLSNIPSVM 656
TSFK +T + + ++ + + S++S+ YC + ++ S+IPSV+
Sbjct: 1271 TSFKV-YSQLTIFANRVSFNNSTAIPFFSTKSVLWYCNRLFQELEGFSSIPSVI 1323
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 27.5 bits (58), Expect = 2.5
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Frame = +3
Query: 327 YHELLRKRLGLPVWEYKNDFMRLLNT---HQCIVLVGETGSGKTTQIPQWSVEFAAVSGL 497
Y E R L ++ D + +N +Q I++ GE+G+GKT FA+V L
Sbjct: 131 YSEKSRDELDPHLYAIAEDSYKCMNQEHKNQTIIISGESGAGKTVSARYIMRYFASVQAL 190
>SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 220
Score = 26.2 bits (55), Expect = 5.9
Identities = 18/85 (21%), Positives = 38/85 (44%)
Frame = +3
Query: 414 IVLVGETGSGKTTQIPQWSVEFAAVSGLGKAKGVACTQPRRVAAMSVAQRVAEEMDVALG 593
++LVG G+GK TQ P ++ ++ L + R+ A+++ ++ +
Sbjct: 6 LILVGPPGAGKGTQAPNIQKKY-GIAHLATGDMLRSQVARQTELGKEAKKIMDQGGLVSD 64
Query: 594 QEVGYSIRFEDCSGPQTLLKYMTDG 668
V I+ E + P+ ++ DG
Sbjct: 65 DIVTGMIKDEILNNPECKNGFILDG 89
>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1141
Score = 25.8 bits (54), Expect = 7.8
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +3
Query: 312 PHSQRYHELLRKRLGLPVWEYKNDF 386
PHS RYH L LG +NDF
Sbjct: 36 PHSSRYHWQLHSNLGESAVFDENDF 60
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,447,611
Number of Sequences: 5004
Number of extensions: 71213
Number of successful extensions: 227
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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