Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_M03
         (832 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...   229   3e-61
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    25   10.0 

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score =  229 bits (561), Expect = 3e-61
 Identities = 119/264 (45%), Positives = 154/264 (58%), Gaps = 2/264 (0%)
 Frame = +1

Query: 43  IIFYCLGI*SGIIGTSLRLLIRAELGNPGS--LIGDDQIYNTIVTAHAFIIXXXXXXXXX 216
           I++   G+ SGIIG+    +IR EL  PGS  L G+ Q+YN  ++AH  ++         
Sbjct: 22  ILYLLFGLVSGIIGSVFSFIIRMELSAPGSQFLSGNGQLYNVAISAHGILMIFFFIIPAL 81

Query: 217 XGGFGN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSS 396
            G FGN LVPL++GAPD+A+PR+NN  F              + E G G G TVYPPLSS
Sbjct: 82  FGAFGNYLVPLMIGAPDVAYPRVNNFTFWLLPPALMLLLISALTEEGPGGGWTVYPPLSS 141

Query: 397 NIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFX 576
             +H G ++DLAI SL L GISS                   S  Q+PLF  A+ IT+  
Sbjct: 142 ITSHSGPAIDLAILSLQLTGISSTLGSVNLIATMINMRAPGLSLYQMPLFAWAIMITSIL 201

Query: 577 XXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGII 756
                   AG + +L +DRNLNTSF+ P GGGDP+LYQHLF FFGHPEVYILI+P FG++
Sbjct: 202 LLLTLPVLAGGLFMLFSDRNLNTSFYAPEGGGDPVLYQHLFWFFGHPEVYILIMPAFGVV 261

Query: 757 SHIISQERGKKETFGCLGIIYAIL 828
           SHII      K  FG  G+++A+L
Sbjct: 262 SHII-PSLAHKPIFGKEGMLWAML 284


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 303 TPTPLPYIINFKKNCRKWCRNRMNS 377
           T T   YIINFKKN   + R +++S
Sbjct: 512 TKTTEEYIINFKKNSWLFFRKKIDS 536


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,790,067
Number of Sequences: 5004
Number of extensions: 52670
Number of successful extensions: 114
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)