Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_M02
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.10 |rpn8||19S proteasome regulatory subunit Rpn8|Schizo...   134   1e-32
SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulat...    28   1.0  
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac...    28   1.0  
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    27   2.4  
SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces pomb...    27   3.1  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    26   5.5  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    25   7.3  
SPAC1687.13c |csn5||COP9/signalosome complex subunit Csn5|Schizo...    25   9.6  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   9.6  
SPAC31A2.10 |||RanGTP-binding protein |Schizosaccharomyces pombe...    25   9.6  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   9.6  

>SPCC1682.10 |rpn8||19S proteasome regulatory subunit
           Rpn8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score =  134 bits (323), Expect = 1e-32
 Identities = 58/112 (51%), Positives = 78/112 (69%)
 Frame = +1

Query: 286 KRLTPGXKVVGWYHTGPKLHQNDIAINELIRRYCPNSVLVIIDAKPKDLGLPTEAYQAVE 465
           K++    K+VGWYHTGP+L  +D+ IN L+++Y PN VLVIID KPK +GLPT AY A++
Sbjct: 90  KKINANEKLVGWYHTGPQLRPSDLEINNLLKKYIPNPVLVIIDVKPKSVGLPTNAYFAID 149

Query: 466 EVHDDGTPTSRTFEHVPSEIXXXXXXXXXXXHLLRDIXDTTVGSLSQRITNQ 621
           E+ DDG+ +SRTF H+PS I           HLLRD  D +VG+L+ R+T Q
Sbjct: 150 EIEDDGSKSSRTFVHLPSSIEAEEAEEIGVEHLLRDTRDASVGTLATRVTQQ 201



 Score = 83.8 bits (198), Expect = 2e-17
 Identities = 38/71 (53%), Positives = 56/71 (78%)
 Frame = +3

Query: 96  DHFNRMSKIGNQKRVVGVLLGCWRAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMY 275
           D +NR +K G ++RVVG+LLG      V++V+NS+A+PF+ED+K+ SVWFLDH+++E+M 
Sbjct: 29  DSYNRSAK-GTKRRVVGILLG-QNNGDVVNVANSYAIPFEEDEKNASVWFLDHNFMESMN 86

Query: 276 GMFKKVNARXK 308
            MFKK+NA  K
Sbjct: 87  EMFKKINANEK 97


>SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulatory
           subunit Rpn11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 308

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
 Frame = +1

Query: 310 VVGWYHTGPK----LHQNDIAINELIRRYCPNSVLVIID 414
           VVGWYH+ P     L   DI   +   +  P +V V++D
Sbjct: 107 VVGWYHSHPGFGCWLSSVDINTQQSFEQLTPRAVAVVVD 145


>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
           Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 119 NRESETSSRCSIGLLESQGCLRRIEQLRSPV 211
           NRE E SS   +G  +  GC R++ Q+R  V
Sbjct: 210 NREDEESSLAEVGYDDIGGCRRQMAQIRELV 240


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = -3

Query: 243 TRQICLCRLHQTGLRSCSIRLRHPWLSNNPIEHRLLVSD 127
           T++  +      G+R C +++ HPWL +   E + +  D
Sbjct: 753 TKKCAMTTSRVLGVRICGMQVWHPWLQSYTFEDKYVGRD 791


>SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 339

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = -2

Query: 250 SRNQTDLSLSSSSNGTAKLFDTSKTPLALQQPNRT 146
           S  Q+ LSL +SSNGT  +  T   P+ L +PN T
Sbjct: 182 SSKQSLLSLKNSSNGTVYVSTTLPCPVEL-KPNIT 215


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/14 (71%), Positives = 13/14 (92%)
 Frame = +1

Query: 220 TTKTNLSGSLTMIT 261
           TTK+NLSG+L M+T
Sbjct: 182 TTKSNLSGNLNMVT 195


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +1

Query: 388 PNSVLVIIDAKPKDLGLPT-EAYQAVEEVHDD 480
           P+  L + D+KP+ LG+ T + Y    +V DD
Sbjct: 567 PDHTLRVKDSKPESLGIDTVKQYTGYLDVEDD 598


>SPAC1687.13c |csn5||COP9/signalosome complex subunit
           Csn5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 299

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
 Frame = +1

Query: 310 VVGWYHTGPK----LHQNDIAINELIRRYCPNSVLVIIDAK 420
           V+GWYH+ P     L   D+      ++Y    V V++D K
Sbjct: 113 VIGWYHSHPNYGCWLSGVDVETQRQNQKYQDPFVAVVLDPK 153


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 370 LIRRYCPNSVLVIIDAKPKDLGLPTEAYQ 456
           LIR Y  N +  IID   +D G+  E+++
Sbjct: 907 LIRIYLQNGIQSIIDVPIRDAGIFVESFE 935


>SPAC31A2.10 |||RanGTP-binding protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 460

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 254 MVKEPDRFVFVVFIKRDCEAVRYV*DTLGSPTT 156
           +V    +F +V+ I  D    RY  +T+G PT+
Sbjct: 232 VVSASQKFSYVICIDEDLNDGRYHEETVGKPTS 264


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -2

Query: 256 SWSRNQTDLSLSSSS--NGTAKLFDTSKTPLALQQPNRTPTT 137
           S S + T +S +S++   GT+    TS T + L   NRT TT
Sbjct: 609 STSSSSTQVSWNSTTPITGTSTSKVTSSTSIPLTSTNRTSTT 650


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,405,843
Number of Sequences: 5004
Number of extensions: 47354
Number of successful extensions: 115
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)