Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_M02
         (656 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1468 + 33811471-33811657,33811888-33811980,33812899-338130...    92   3e-19
05_01_0034 - 228939-229028,229117-229230,229309-229430,229827-23...    40   0.002
06_01_0414 + 2948868-2948998,2949136-2949202,2949442-2949531,295...    32   0.46 
01_01_0691 - 5328169-5328228,5328300-5328488,5328611-5328768,532...    31   1.1  
07_01_1074 - 9599465-9599545,9599632-9599690,9600070-9600143,960...    29   2.5  
03_05_0142 - 21217375-21217518,21217851-21217899,21218191-212182...    28   7.5  
02_05_1224 + 35045268-35045270,35045735-35045863,35046037-350461...    27   9.9  

>04_04_1468 +
           33811471-33811657,33811888-33811980,33812899-33813027,
           33813089-33813166,33813377-33813435,33813522-33813644,
           33814225-33814282,33814383-33814468,33814564-33814635
          Length = 294

 Score = 92.3 bits (219), Expect = 3e-19
 Identities = 40/68 (58%), Positives = 57/68 (83%)
 Frame = +3

Query: 96  DHFNRMSKIGNQKRVVGVLLGCWRAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMY 275
           DH+NR+++   +KRVVGVLLG   ++G +DV+NS+AVPF+EDDKD  +WFLDH+Y E+M+
Sbjct: 29  DHYNRVAR-DTRKRVVGVLLGT-SSRGSVDVTNSYAVPFEEDDKDPRIWFLDHNYHESMF 86

Query: 276 GMFKKVNA 299
            MFK++NA
Sbjct: 87  SMFKRINA 94



 Score = 29.5 bits (63), Expect = 2.5
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +1

Query: 559 HLLRDIXDTTVGSLSQRITNQ 621
           HLLRD+ DTT+ +L+  +T++
Sbjct: 166 HLLRDVKDTTISTLATEVTSK 186


>05_01_0034 -
           228939-229028,229117-229230,229309-229430,229827-230056,
           230458-230537,230641-230859
          Length = 284

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 22/57 (38%), Positives = 30/57 (52%)
 Frame = +3

Query: 132 KRVVGVLLGCWRAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNAR 302
           +RV+G LLG     G + V NS+ VP +E     +   LD +Y  NMY    KVN +
Sbjct: 41  ERVIGTLLGSVLPDGTVHVRNSYVVPHNESPDQVA---LDIEYHHNMYASHHKVNPK 94


>06_01_0414 +
           2948868-2948998,2949136-2949202,2949442-2949531,
           2950509-2950565,2950684-2950732,2950934-2951010,
           2952776-2952815,2952909-2953003,2953174-2953341,
           2953634-2953721,2954275-2954341,2954571-2954646,
           2954759-2954876,2954988-2955233,2955296-2955471,
           2956056-2956238,2956331-2956450,2956586-2956621
          Length = 627

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 19/62 (30%), Positives = 26/62 (41%)
 Frame = +1

Query: 292 LTPGXKVVGWYHTGPKLHQNDIAINELIRRYCPNSVLVIIDAKPKDLGLPTEAYQAVEEV 471
           LT    + GW+HT      N +     +  + PN  L IID K     L    Y AVE +
Sbjct: 444 LTQEVMIDGWFHTDDDYMPNTMYNTGDVGEWQPNGSLKIIDRKKNIFKLSQGEYVAVENL 503

Query: 472 HD 477
            +
Sbjct: 504 EN 505


>01_01_0691 -
           5328169-5328228,5328300-5328488,5328611-5328768,
           5329677-5329767,5330359-5330438,5330472-5330533,
           5330603-5330730,5331290-5331508,5331586-5331715,
           5331804-5331870,5331968-5332062,5332150-5332221,
           5332307-5332362,5332485-5332554,5332662-5332735,
           5332820-5332954,5334135-5334314
          Length = 621

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 22/76 (28%), Positives = 39/76 (51%)
 Frame = -2

Query: 325 GTSQQLFXLALTFLNIPYMFSK*SWSRNQTDLSLSSSSNGTAKLFDTSKTPLALQQPNRT 146
           G + Q+  L+  FL+  ++  +  W RN    SL+ S+NG++ +  ++ TP A QQ  + 
Sbjct: 441 GFTAQVHELSHYFLHKEWIMEQ--WERNYYITSLAGSNNGSSVVIMSTGTPYA-QQSYKV 497

Query: 145 PTTRF*FPILLMRLKW 98
             +   FP   +  KW
Sbjct: 498 SDS---FPFKWINKKW 510


>07_01_1074 -
           9599465-9599545,9599632-9599690,9600070-9600143,
           9600797-9600996,9601074-9601365,9601665-9602411,
           9602653-9602696,9602714-9602827,9603590-9603838,
           9603922-9603927
          Length = 621

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +1

Query: 559 HLLRDIXDTTVGSLSQRITNQ 621
           HLL D+ DTT+G+L+  +T++
Sbjct: 579 HLLMDVKDTTIGTLATEVTSK 599



 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +1

Query: 382 YCPNSVLVIIDAKPKD 429
           Y PN VLVIID +PK+
Sbjct: 552 YVPNPVLVIIDVQPKE 567


>03_05_0142 -
           21217375-21217518,21217851-21217899,21218191-21218258,
           21218368-21218413,21218548-21218641,21218775-21218837,
           21219018-21219171,21219414-21219476,21219568-21219681,
           21219779-21219844,21220813-21220870,21221859-21221932,
           21222045-21222110,21223139-21223187,21223483-21223550,
           21223660-21223705,21223908-21224001,21224117-21224179,
           21224290-21224412,21224503-21224536,21224906-21224968,
           21225825-21225911,21226293-21226370
          Length = 587

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 7/27 (25%), Positives = 16/27 (59%)
 Frame = -3

Query: 543 FSLLCTNFTWNMFKGPRSWCTIIVYFL 463
           ++++C    W   +GP+ W   ++YF+
Sbjct: 441 WNIICVTAAWIKGEGPKIWFLAVIYFI 467


>02_05_1224 +
           35045268-35045270,35045735-35045863,35046037-35046180,
           35046306-35046451,35046583-35046739,35046838-35046896,
           35046978-35047137,35047716-35047865,35047969-35048105,
           35048186-35048332,35048428-35048540,35048880-35048971,
           35049637-35049738,35050108-35050145,35050255-35050381,
           35050462-35050632,35050721-35050852,35050929-35051038,
           35051118-35051178,35051386-35051427,35051756-35051933,
           35052043-35052248,35052843-35052962,35053138-35053182,
           35053310-35053408,35053846-35054058,35054254-35054393,
           35054469-35054583,35054684-35054722,35054816-35054899,
           35054969-35055139,35055891-35056100,35056193-35056378,
           35056473-35056601,35056679-35056749,35056834-35056933,
           35057016-35057072,35057778-35057834,35057940-35058020,
           35058256-35058338,35058448-35058562
          Length = 1572

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 21/101 (20%), Positives = 40/101 (39%)
 Frame = -3

Query: 627 EQLVSDTL*KTAHSGIXDIS*QMLYSHXFSLLCTNFTWNMFKGPRSWCTIIVYFLYCLVS 448
           ++ +  TL   A  G  D   + +YS  F  L      ++ + P S C I V  +Y   S
Sbjct: 381 DENIVKTLDPEAAKGSRDALAKTVYSRLFDWLVDKINKSIGQDPNSKCLIGVLDIYGFES 440

Query: 447 FSR*TKIFRFSINNYKH*IWAITPN*LIYCYVILMKFRSSV 325
           F         S+ ++      + P    + + +++ F+  V
Sbjct: 441 FKTNRCFTALSLKHFLKKCKMLDPEYCFFMFSVILLFQKHV 481


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,539,173
Number of Sequences: 37544
Number of extensions: 298195
Number of successful extensions: 682
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)