Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_L22
         (736 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0018 - 9674771-9674995,9675079-9675126,9675471-9675530,967...    37   0.014
08_02_0431 + 17053928-17054189,17054296-17054564,17054661-170548...    35   0.058
02_01_0228 + 1507314-1507566,1507645-1507913,1508010-1508213,150...    35   0.058
07_01_0794 - 6179424-6179714,6179797-6179844,6180189-6180248,618...    35   0.077
09_02_0391 + 8482996-8483216,8484146-8484194,8484559-8487465           28   6.7  

>10_06_0018 -
           9674771-9674995,9675079-9675126,9675471-9675530,
           9675693-9675758,9675844-9675906,9675985-9676032,
           9676150-9676215,9676493-9676558,9676660-9676725,
           9676822-9676887,9676975-9677058,9677310-9677654,
           9677738-9677833,9678129-9678332,9678434-9678726,
           9678833-9678958,9679217-9679226
          Length = 643

 Score = 37.1 bits (82), Expect = 0.014
 Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
 Frame = +3

Query: 69  VGVXNASPKVNXVHXKQQNCENSPQGHVFNEAQVIGTWHPQQHKSKKTYAFGD-SECVQL 245
           V V    P     H +Q+N   + Q HV +E +   T H   HK+K+T+   D  + +++
Sbjct: 490 VKVYGDGPLQEICHVEQENIVMNSQSHVQDEDKTPPTKHATAHKNKRTFGLNDHGKQMEI 549

Query: 246 TSVNEQERNELKEMIGNYVD 305
               +Q+ N++  +  N ++
Sbjct: 550 ICAKKQQCNKMDFITDNSME 569


>08_02_0431 +
           17053928-17054189,17054296-17054564,17054661-17054864,
           17054974-17055066,17055160-17055255,17055339-17055683,
           17055935-17056018,17056106-17056171,17056268-17056333,
           17056436-17056501,17056635-17056700,17056798-17056863,
           17056981-17057028,17057107-17057169,17057255-17057320,
           17057483-17057542,17057888-17057935,17058019-17058255,
           17058346-17058366
          Length = 741

 Score = 35.1 bits (77), Expect = 0.058
 Identities = 19/80 (23%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
 Frame = +3

Query: 69  VGVXNASPKVNXVHXKQQNCENSPQGHVFNEAQVIGTWHPQQHKSKKTYAFGD-SECVQL 245
           V V    P     H +Q+N   + Q HV +E +   T H   HK+K+T+   D  + +++
Sbjct: 577 VKVYGDGPLQEICHVEQENIVMNSQSHVQDEDKTPPTKHATAHKNKRTFGLNDHGKQMEI 636

Query: 246 TSVNEQERNELKEMIGNYVD 305
               +Q+ +++  +  N ++
Sbjct: 637 ICAKKQQCSKMDFITDNSME 656


>02_01_0228 +
           1507314-1507566,1507645-1507913,1508010-1508213,
           1508323-1508415,1508509-1508604,1508688-1509032,
           1509123-1509191,1509284-1509367,1509455-1509520,
           1509735-1509800,1509934-1509999,1510097-1510162,
           1510280-1510327,1510406-1510468,1510554-1510619,
           1510782-1510841,1511185-1511232,1511315-1511605
          Length = 750

 Score = 35.1 bits (77), Expect = 0.058
 Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
 Frame = +3

Query: 69  VGVXNASPKVNXVHXKQQNCENSPQGHVFNEAQVIGTWHPQQHKSKKTYAFGD-SECVQL 245
           V V    P     H +Q+N   + Q H  +E +   T H   HK+K+T+   D  + +++
Sbjct: 575 VKVYGDGPLQEICHVEQENIVMNSQSHAQDEDKTPPTKHATAHKNKRTFGLNDHGKQMEI 634

Query: 246 TSVNEQERNELKEMIGNYVD 305
               EQ+ +++  +  N ++
Sbjct: 635 ICAKEQQCSKMDFITDNSME 654


>07_01_0794 -
           6179424-6179714,6179797-6179844,6180189-6180248,
           6180411-6180476,6180562-6180624,6180703-6180750,
           6180868-6180933,6181031-6181096,6181230-6181295,
           6181510-6181575,6181663-6181746,6181839-6181907,
           6181998-6182342,6182426-6182521,6182615-6182707,
           6182817-6183020,6183117-6183385,6183492-6183753
          Length = 753

 Score = 34.7 bits (76), Expect = 0.077
 Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 5/97 (5%)
 Frame = +3

Query: 30  SPQRRCLLIVLLA----VGVXNASPKVNXVHXKQQNCENSPQGHVFNEAQVIGTWHPQQH 197
           S +R+C  I  L     V V    P     H +Q+N   + Q H  +E +   T H   H
Sbjct: 561 SKKRQCNTIDFLTDNSTVKVYGDGPLQEICHVEQENIVMNSQSHAQDEDKTPPTKHATAH 620

Query: 198 KSKKTYAFGD-SECVQLTSVNEQERNELKEMIGNYVD 305
           K+K+T+   D  + +++    +Q+ +++  +  N ++
Sbjct: 621 KNKRTFGLNDHGKQMEIICAKKQQCSKMDFITDNSME 657


>09_02_0391 + 8482996-8483216,8484146-8484194,8484559-8487465
          Length = 1058

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +3

Query: 42  RCLLIVLLAVGVXNASPKVNXVHXKQQNCENSPQGHVFNEAQVIGTW 182
           +CL  ++ AVGV   +      H  + N       HV N+++ +G W
Sbjct: 174 QCLFAIVGAVGVGKTTLAQKIYHDTKNNFRTRLWVHVSNDSRNLGIW 220


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,485,841
Number of Sequences: 37544
Number of extensions: 382811
Number of successful extensions: 861
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)