Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_F_L20
(716 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 30 0.29
SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces pomb... 29 0.66
SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|... 27 2.7
SPBP35G2.05c |cki2||serine/threonine protein kinase Cki2|Schizos... 27 2.7
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 27 3.5
SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit L7|... 26 4.7
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc... 26 4.7
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy... 26 4.7
SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces ... 26 4.7
SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces po... 26 6.2
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|... 26 6.2
SPBC2D10.08c |||mitochondrial ribosomal protein subunit Yml6|Sch... 26 6.2
SPAC6F12.13c |fps1||geranyltranstransferase Fps1|Schizosaccharom... 25 8.2
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 30.3 bits (65), Expect = 0.29
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 3/102 (2%)
Frame = -2
Query: 457 TPSIMLSLMLSP*VKRRTLITTCTMMITSKKIAYVTTMQ*LSRIAPQHPKNAITNITAPT 278
+PS+ LS + + + T++ S K T A P+N T IT+PT
Sbjct: 320 SPSVALSTSSTTTITNASTPAANTIISRSSKPTDTTNS---ISFANTTPENTSTQITSPT 376
Query: 277 TMKIHGP-TARWVFSKS--LTMVQFIRNATPIPTSSRPRSAT 161
+ P T+ V + S +T + +TPI +SS S+T
Sbjct: 377 AVNSSTPITSSSVLNSSTPITSSSILNTSTPITSSSVLNSST 418
>SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 398
Score = 29.1 bits (62), Expect = 0.66
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = +3
Query: 540 ECCGNTGAINYGQFTLPESCCVKKSILSTFAGNNCTVDAANPGC 671
+C G+ YGQ C S++S AG N T+ A C
Sbjct: 302 DCSGHGRCSKYGQLDSCYVCQCSNSVVSNAAGQNKTIRWAGESC 345
>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1018
Score = 27.1 bits (57), Expect = 2.7
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +3
Query: 438 ESIMDGVGVLFKKRSDANADEAAEAVFSELQRQ-FECC 548
ESI+ + V FK+R+D N E F EL +Q F C
Sbjct: 588 ESIVQSLSVAFKERNDRNEQE-IPFFFEELLKQLFTLC 624
>SPBP35G2.05c |cki2||serine/threonine protein kinase
Cki2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 435
Score = 27.1 bits (57), Expect = 2.7
Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 7/97 (7%)
Frame = -2
Query: 403 LITTCTMMITSKKIAYVTTMQ*LSRIAPQHPKNAITNITAPTTMKIHGPTAR---WVFSK 233
L C + K +A +T Q LSR+ H KN + P I P++R V+
Sbjct: 95 LFEWCGRRFSVKTVA-MTAKQMLSRVQTIHEKNLVYRDIKPDNFLIGRPSSRNANMVYMV 153
Query: 232 SLTMVQFIRNATP---IPTSSRPR-SATTRLKKNSTY 134
M ++ R+ IP S R S T R +T+
Sbjct: 154 DFGMAKYYRDPKTKQHIPYSERKSLSGTARYMSINTH 190
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 26.6 bits (56), Expect = 3.5
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +2
Query: 119 NEFCEICAILLQPGRRAPRPAASGDWSSVPDELDHGQR 232
+E E+ L+P RAPRP+ S S E+ H R
Sbjct: 77 DEKLEVDFAFLEPPERAPRPSISTRSRSQSPEVQHRDR 114
>SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit
L7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 287
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -1
Query: 452 IHNALL-DALAVGEEEDADHHLHNDDHQQED 363
+H+ +L D LA D D L D+H Q+D
Sbjct: 56 LHDTILPDVLAASYRHDIDTALSTDEHTQKD 86
>SPAC6B12.05c |||chromatin remodeling complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 295
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/60 (20%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = -1
Query: 425 AVGEEEDADHHLHNDD-HQQEDCVRDDHAVTLAYRSTASQERDHEHYSPDDYEDPRTDSK 249
+V +E++ + L DD + +ED + D+ + + +E + E +P+ + +S+
Sbjct: 46 SVLDEQEIEEALEEDDTNYEEDIIDDEESAQVDEEELEEEEEEEEDATPEPVVTSKKNSR 105
>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 286
Score = 26.2 bits (55), Expect = 4.7
Identities = 9/25 (36%), Positives = 12/25 (48%)
Frame = -1
Query: 419 GEEEDADHHLHNDDHQQEDCVRDDH 345
G ++ HH H+ DH D DH
Sbjct: 10 GSDDSTHHHTHDYDHHNHDHHGHDH 34
>SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 429
Score = 26.2 bits (55), Expect = 4.7
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +2
Query: 269 LHSRRGCNVRDRVLGMLWSDTRESLHGRHVRNLLAGDHH 385
L SRR N + +V WS+ E +H + RNL + H
Sbjct: 12 LFSRRFPNWKRKVQTDSWSNVPEHIHSKIGRNLFQKEGH 50
>SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 361
Score = 25.8 bits (54), Expect = 6.2
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -2
Query: 331 RIAPQHPKNAITNITAPTTMKIHG 260
RI P P N + NIT P+T+ HG
Sbjct: 175 RIFP--PTNLVANITLPSTLHPHG 196
>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 732
Score = 25.8 bits (54), Expect = 6.2
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = -1
Query: 410 EDADHHLHNDDHQQEDCVRDDHAVTLAYRSTASQERDHEHYSPDDY 273
E+ + N + Q+ DDH + SQE HEH D+
Sbjct: 505 EEFEEEKDNVEAQKMGYTNDDHVSQHEHTHENSQEHHHEHNHNHDH 550
>SPBC2D10.08c |||mitochondrial ribosomal protein subunit
Yml6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 261
Score = 25.8 bits (54), Expect = 6.2
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -2
Query: 232 SLTMVQFIRNATPIPTSSRPRSATTRLKKNSTYFTKLVPHPML 104
SL + +F + T + +P S T + NS+ FTK P P L
Sbjct: 218 SLIVEKFAQRNT-LSDMDQPASLTAYVDANSSSFTKSKPEPSL 259
>SPAC6F12.13c |fps1||geranyltranstransferase
Fps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 347
Score = 25.4 bits (53), Expect = 8.2
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Frame = +3
Query: 477 RSDANADEAAEAVFSEL--QRQFECCGNTGAINYGQFT--LPESCCVKKSILSTFAG 635
R D+ +++ +AVF EL + +FE + + + ES +KKSI +TF G
Sbjct: 284 RKDSESEKRVKAVFEELNIRGEFENYEESEVSEIKKLIDGVDESTGLKKSIFTTFLG 340
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,505,017
Number of Sequences: 5004
Number of extensions: 48086
Number of successful extensions: 186
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -