Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_L19
         (605 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.04 |||methylenetetrahydrofolate reductase |Schizosaccha...    27   1.6  
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo...    26   4.9  
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa...    25   6.5  
SPAC589.06c |||pho88 family protein|Schizosaccharomyces pombe|ch...    25   6.5  
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr...    25   6.5  

>SPBC1711.04 |||methylenetetrahydrofolate reductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 320

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 330 PSLITKDGGACVCFSLQCN 274
           PS + +DG  C+CFS + N
Sbjct: 259 PSNLVRDGAVCICFSSEKN 277


>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1055

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = -2

Query: 400 KRSKEILLRRSKDLPESSMRYVDSVINNKRRWSVRMFQFAM 278
           KR +E+L +R KD  E     V      ++RW  +    A+
Sbjct: 318 KRKEEVLYQRYKDSNEGEQNEVTMGAAEQQRWEAQQINKAL 358


>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 669

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 259 VPNESRLTLSFAFHFGTDPAVDPDV 185
           +PNE  LT++  F  GT    DP+V
Sbjct: 193 LPNELPLTITNFFRLGTPGFTDPEV 217


>SPAC589.06c |||pho88 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 202

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 187 VSFAHPRVPYSVVKRVSIDDANNFSVYIFN 98
           + +A P V  S++  +S+   N  S+YIFN
Sbjct: 114 MGYAQPLVIQSILPLISLFTNNLVSIYIFN 143


>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 872

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = -2

Query: 160 YSVVKRVSIDDANNFSVYIFNPLYLCIADCSTFTSRNINISSCRAIK 20
           + VV     D    + VY+F  + LC  + ST   +  +IS  +  K
Sbjct: 436 WDVVNVCKADIEREYHVYLFEKILLCCKEMSTLKRQARSISMNKKTK 482


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,152,496
Number of Sequences: 5004
Number of extensions: 40348
Number of successful extensions: 124
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)