Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_L19
         (605 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0273 + 15643469-15643654,15644882-15644914,15645688-15645735     33   0.23 
09_04_0313 - 16594171-16594559,16595682-16595751                       30   1.2  
03_06_0331 - 33181757-33181795,33182325-33182453,33182941-331829...    30   1.6  
05_01_0383 + 2990812-2990855,2991364-2991463,2991554-2991622,299...    29   3.8  
02_05_1056 - 33804717-33804871,33805352-33805418,33805508-338055...    28   5.0  
03_02_0386 + 8009884-8010133,8010274-8010338,8010545-8010658,801...    28   6.6  

>11_04_0273 + 15643469-15643654,15644882-15644914,15645688-15645735
          Length = 88

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = +2

Query: 53  SGGEGGAVGDAQVKWIKNVNG 115
           SGGEGG VGD  +KWI +  G
Sbjct: 54  SGGEGGEVGDGNMKWIGHDRG 74


>09_04_0313 - 16594171-16594559,16595682-16595751
          Length = 152

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +2

Query: 17  GFDGSATGDVNISGGEGGAVGDAQVKWIKNVNGEI 121
           G DG+A+  V++ G  GGAV   ++  ++   G++
Sbjct: 29  GGDGTASWSVSVGGDHGGAVSSVRIGTLRRQTGQV 63


>03_06_0331 -
           33181757-33181795,33182325-33182453,33182941-33182967,
           33183459-33183545,33183827-33183975,33185467-33185521,
           33185596-33187584,33188705-33188782
          Length = 850

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
 Frame = -3

Query: 423 SVQKRYY*SVQKRYY*GVQKIFRNLQCGT*T------PSLITKDGGACVCFSL 283
           S QKR   SV+ +YY  ++K  RN  C T        P   T +GG CVC  L
Sbjct: 97  SFQKRKIDSVKNQYY-AMRKRVRNEPCSTVDLGFLIDPCSCTMNGGQCVCGGL 148


>05_01_0383 +
           2990812-2990855,2991364-2991463,2991554-2991622,
           2991724-2991960,2992045-2992228,2992307-2992442,
           2992529-2992691,2992958-2993108,2993154-2993278,
           2993349-2993504,2993792-2993860,2993951-2994019,
           2994127-2994264,2994626-2994773,2994856-2994866,
           2995212-2995352,2995441-2995569,2995860-2995899,
           2996020-2996348,2996902-2996919
          Length = 818

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +1

Query: 166 HVGARS*RQDPRLGLYRSEKQN*VSG 243
           H GA S  +D RLGLYR   Q  ++G
Sbjct: 731 HAGAASGGEDVRLGLYREATQGEITG 756


>02_05_1056 -
           33804717-33804871,33805352-33805418,33805508-33805576,
           33806414-33806548,33806609-33806680,33807281-33807375,
           33807778-33807859,33807949-33807999,33808107-33808187,
           33808534-33808575,33808705-33808803,33809044-33809115,
           33809166-33809270
          Length = 374

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 6/58 (10%)
 Frame = -2

Query: 475 AQPNMIIIMIKIHLLSLKRSEEILLKRSK--EILLRRSK----DLPESSMRYVDSVIN 320
           A+   +++++ +H+   K S+ I L+RSK  EI+LR  K    DL  S +   DS+++
Sbjct: 14  AKQEKVLLVLILHIPYCKYSQAIDLQRSKNCEIMLRNIKMPLPDLMNSVLALDDSIVD 71


>03_02_0386 +
           8009884-8010133,8010274-8010338,8010545-8010658,
           8010736-8010895,8010975-8011093,8011209-8011635,
           8011834-8012057,8012863-8012973,8013056-8013188,
           8013259-8013365,8013430-8013444,8013482-8013571,
           8013855-8013917,8013973-8014053,8014136-8014208,
           8014312-8014367,8014460-8014554,8014649-8014683,
           8015449-8015525
          Length = 764

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -2

Query: 313 RRWSVRMFQFAMQHAAARVPNESRLTLSFAFHFGTDPAVDPDV 185
           RRW+   F    +HAA  V +     +     FGT P +D DV
Sbjct: 460 RRWACVNFSPKRKHAARVVSDIIGKCIDMGMEFGTLPKMDVDV 502


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,507,024
Number of Sequences: 37544
Number of extensions: 265116
Number of successful extensions: 929
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)