Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_F_L14
(780 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0020 + 22182649-22182829,22183900-22183999,22184415-221844... 32 0.59
09_04_0302 + 16501020-16501049,16501568-16501659,16502063-165021... 31 0.78
10_06_0060 + 10184165-10185002,10185084-10185167,10185262-10186334 30 2.4
08_02_0707 - 20212190-20214592 30 2.4
03_06_0454 + 34044351-34044499,34045495-34045510,34045640-340458... 29 4.1
02_04_0454 + 23064081-23064139,23064297-23064366,23064553-230658... 29 4.1
07_01_0183 + 1297445-1297796,1297896-1298424,1298548-1298630,129... 29 5.5
05_06_0126 - 25834129-25834214,25834595-25834658,25836201-258365... 29 5.5
05_01_0214 - 1615519-1616775 29 5.5
04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355 29 5.5
01_06_1112 + 34606171-34606266,34607170-34607231,34607932-346080... 29 5.5
07_03_1193 - 24702135-24702421,24702835-24703160,24703240-247039... 28 7.2
02_02_0401 + 9847398-9847463,9848916-9849019,9849873-9849876,984... 28 7.2
05_02_0120 - 6797954-6798970,6799466-6799951 28 9.6
02_03_0074 + 14781763-14784191,14784888-14784978,14785180-147852... 28 9.6
>04_04_0020 +
22182649-22182829,22183900-22183999,22184415-22184491,
22184718-22184809,22188655-22189767
Length = 520
Score = 31.9 bits (69), Expect = 0.59
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -2
Query: 413 HKHHYAQGQFQCHQHQHEDRVGDKHAVALPDGTAASEECNDESD 282
H+HH + H HE+ + A A DG +S+E +DE +
Sbjct: 474 HRHHPQPPPSRPHYQYHENNIAVAAAAAASDGEQSSDEEDDEEE 517
>09_04_0302 +
16501020-16501049,16501568-16501659,16502063-16502198,
16502297-16502727,16502950-16503028
Length = 255
Score = 31.5 bits (68), Expect = 0.78
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -2
Query: 446 VRDSSNYSVEIHKHHYAQGQFQCHQHQHEDRVG 348
V SS+ S+E H +HY G H HQ D VG
Sbjct: 117 VGSSSSDSLEHHSNHYCNGGHHHHGHQCYDSVG 149
>10_06_0060 + 10184165-10185002,10185084-10185167,10185262-10186334
Length = 664
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +2
Query: 332 QLHACHLRDL-HAGVDGTETDLGRNGVCESRRSSCCYPELD 451
+L+AC L AG + T GR G +S CCYP D
Sbjct: 147 RLYACEDSSLCRAGCEDVAT-CGRGGAAAGAKSGCCYPLSD 186
>08_02_0707 - 20212190-20214592
Length = 800
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/52 (25%), Positives = 23/52 (44%)
Frame = -2
Query: 413 HKHHYAQGQFQCHQHQHEDRVGDKHAVALPDGTAASEECNDESDAPNNHTGH 258
H H ++ H H HED HA+ + A E + +++ ++H H
Sbjct: 504 HSHSHSHSHSHSHVHGHEDHHNHDHALQGVNHNGACCEHHGDANKSHHHDHH 555
>03_06_0454 + 34044351-34044499,34045495-34045510,34045640-34045862,
34045969-34046092,34046168-34046294,34046821-34046882,
34046972-34048023,34048167-34048556,34048667-34052628,
34052710-34052796,34052885-34053004,34053096-34053152
Length = 2122
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = -2
Query: 380 CHQHQHEDRVGDKHAVALPDGTAASEECNDESDAPNNHTGHRRYSE 243
C + H+D +K + PDG AAS N+ D ++H G ++E
Sbjct: 1930 CLDYPHDDHNSEKEDIHQPDGYAASPGNNNHFD--SSHEGGYLHAE 1973
>02_04_0454 +
23064081-23064139,23064297-23064366,23064553-23065815,
23065946-23066515
Length = 653
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -2
Query: 359 DRVGDKHAVALPDGTAASEECNDESDAPNNHTGHRRYSEA 240
D +HA A P A + +D+ D+P GHRR A
Sbjct: 350 DEFALRHAAAPPPPVALAVSPDDDDDSPARSGGHRRSRSA 389
>07_01_0183 +
1297445-1297796,1297896-1298424,1298548-1298630,
1298901-1298989,1299091-1299164,1300196-1300246,
1300439-1300515,1302199-1302863
Length = 639
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = -2
Query: 449 PVRDSSNYSVEIHKHHYAQGQFQCHQHQHEDRVGDKHAVALPDGTAAS 306
P SS H HH+ Q Q Q Q QH + +H + P T A+
Sbjct: 25 PHMASSTMDEHHHVHHHQQQQQQQQQQQHHQQ--QQHGLFFPSVTTAA 70
>05_06_0126 -
25834129-25834214,25834595-25834658,25836201-25836521,
25836912-25837040,25837118-25837177,25837251-25837548,
25837622-25837776,25837959-25838097,25838185-25838266,
25838337-25838455,25838537-25838664,25838810-25838983,
25839052-25839203,25839393-25839425,25840362-25841331,
25841412-25841537
Length = 1011
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = -2
Query: 383 QCHQHQHEDRVGDKHAVALPDGTAASEECNDESDAPNNHTGHRR 252
+C H + GD+H +A D T S CN + N RR
Sbjct: 186 ECLDHYNALHPGDEHDLAPGDVTLCSAPCNSTTWTHGNFVARRR 229
>05_01_0214 - 1615519-1616775
Length = 418
Score = 28.7 bits (61), Expect = 5.5
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -2
Query: 413 HKHHYAQGQFQCHQHQHEDRVGDKHAVAL 327
H HH+ + Q H H HED G+ V L
Sbjct: 207 HDHHHHEDQEHGHVHHHEDGHGNSITVNL 235
>04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355
Length = 1109
Score = 28.7 bits (61), Expect = 5.5
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 413 HKHHYAQGQFQCHQHQHEDRVGDK 342
H+HH+ Q Q H HQ + R G +
Sbjct: 139 HRHHHHQRQRHHHHHQRQQRRGSR 162
>01_06_1112 +
34606171-34606266,34607170-34607231,34607932-34608019,
34608104-34608165,34608246-34608342,34608499-34608930,
34609042-34610061,34610151-34610282,34610354-34610470,
34610982-34611062,34611321-34611447,34611547-34611592,
34611663-34611708
Length = 801
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/64 (25%), Positives = 28/64 (43%)
Frame = -2
Query: 455 VHPVRDSSNYSVEIHKHHYAQGQFQCHQHQHEDRVGDKHAVALPDGTAASEECNDESDAP 276
+H R+ S+ + H+H A Q + + R G + DG++AS + D P
Sbjct: 247 IHHSRNVSSENPPSHRHPNATSQIDFNGVRRSQRTGSSGSFGSFDGSSASNKSVDSGALP 306
Query: 275 NNHT 264
+ T
Sbjct: 307 DAPT 310
>07_03_1193 -
24702135-24702421,24702835-24703160,24703240-24703910,
24704342-24704421,24704515-24704572
Length = 473
Score = 28.3 bits (60), Expect = 7.2
Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Frame = -3
Query: 622 RTSVQPAYALITVQGVVEQHVMGRVKDRYEPGPVGPQQLN-LCSMTWNVSWSCWKVLFIQ 446
R V P+ +T + + ++ P P ++ LC++TWNV+ + + L +
Sbjct: 177 RARVVPSTVFLTADRRRKTQALSKLTTPSSSSPAPPLMMSCLCAVTWNVTCTYSQHLASK 236
Query: 445 FGIAATTPSRFTN-TITP 395
+ + S F N TI P
Sbjct: 237 YPSCCVSFSSFYNDTIVP 254
>02_02_0401 +
9847398-9847463,9848916-9849019,9849873-9849876,
9849968-9851230
Length = 478
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = -1
Query: 261 PPALL*SWSLTAQSLCQRIVNEPPIRD 181
PPA+L +S S+C++IV EPP+ D
Sbjct: 400 PPAVLQGFSPEVPSVCEKIV-EPPLAD 425
>05_02_0120 - 6797954-6798970,6799466-6799951
Length = 500
Score = 27.9 bits (59), Expect = 9.6
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = -1
Query: 576 SSSSTLWAGSRIGTSPDPL 520
SSS++ WAG+R+ T+PD L
Sbjct: 305 SSSTSTWAGARLLTNPDHL 323
>02_03_0074 +
14781763-14784191,14784888-14784978,14785180-14785230,
14785882-14785947,14786509-14786610
Length = 912
Score = 27.9 bits (59), Expect = 9.6
Identities = 11/37 (29%), Positives = 17/37 (45%)
Frame = -2
Query: 413 HKHHYAQGQFQCHQHQHEDRVGDKHAVALPDGTAASE 303
H HH++Q Q H H G + ++P A+E
Sbjct: 156 HPHHHSQPQQPQSHHHHHHHSGSRKRHSMPPAYTAAE 192
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,609,279
Number of Sequences: 37544
Number of extensions: 418400
Number of successful extensions: 1304
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1299
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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