Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_L09
         (604 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q17J49 Cluster: Putative uncharacterized protein; n=1; ...    40   0.034
UniRef50_O97420 Cluster: UPF0184 protein CG14818; n=2; Sophophor...    33   5.2  

>UniRef50_Q17J49 Cluster: Putative uncharacterized protein; n=1;
           Aedes aegypti|Rep: Putative uncharacterized protein -
           Aedes aegypti (Yellowfever mosquito)
          Length = 117

 Score = 40.3 bits (90), Expect = 0.034
 Identities = 18/29 (62%), Positives = 23/29 (79%)
 Frame = +1

Query: 145 ERKNDDIHQQLKXLLQSNIAIRQEMREEN 231
           E++NDD+ +QL  LLQSN  IRQ M+EEN
Sbjct: 64  EQRNDDLKEQLLNLLQSNREIRQSMQEEN 92


>UniRef50_O97420 Cluster: UPF0184 protein CG14818; n=2;
           Sophophora|Rep: UPF0184 protein CG14818 - Drosophila
           melanogaster (Fruit fly)
          Length = 96

 Score = 33.1 bits (72), Expect = 5.2
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = +1

Query: 145 ERKNDDIHQQLKXLLQSNIAIRQEMREENKDVSNS 249
           E++ DDI  QL+ LL SN  IR+ + EEN +   S
Sbjct: 46  EQRTDDIMSQLRELLNSNREIRRLIAEENDNAPES 80


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 426,364,445
Number of Sequences: 1657284
Number of extensions: 6912639
Number of successful extensions: 14465
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 14041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14458
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 42732687689
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)