Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_L09
         (604 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone...    26   3.7  
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar...    26   4.9  
SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc...    25   6.4  
SPBC83.16c |||conserved fungal protein|Schizosaccharomyces pombe...    25   6.4  
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    25   8.5  

>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 809

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 9/29 (31%), Positives = 22/29 (75%)
 Frame = +1

Query: 139 SXERKNDDIHQQLKXLLQSNIAIRQEMRE 225
           S +R+N+++ +QLK   + NI++++++ E
Sbjct: 654 SLKRENEELREQLKVEHEENISMQKQLSE 682


>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 598

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +1

Query: 136 ISXERKNDDIHQQLKXLLQSNIAIRQEMREENKDVSNSN 252
           ++ +R+N    Q ++ L +SN+ +  +  E  K  SNSN
Sbjct: 547 MAEKRRNSGTEQVVRQLSKSNVEVIGKGGERKKVASNSN 585


>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
           Lag1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/56 (21%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +2

Query: 356 Y*YYHLSIFSDQYHKVSVSF--K*CIIIHLQYLSMNNYLACLHHLNVISCIFMSVG 517
           Y  Y++S     Y+ + + F  +  +++HL+    +++    HH+   + I +S G
Sbjct: 192 YPQYYMSPLFKAYYLIQLGFWLQQILVLHLEQRRADHWQMFAHHIVTCALIILSYG 247


>SPBC83.16c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 563

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/55 (20%), Positives = 28/55 (50%)
 Frame = +2

Query: 131 IGFLXSVKMMIFTNN*KXFCNPILQLDKKCVKKIRTSATVIEEMQIQHYFKFNCA 295
           + +  S+ +M+  +    FC+  +    K V K+R + ++  ++  +H+  F+ A
Sbjct: 98  VEYRVSIGLMLLLSALIGFCSESIVTSVKSVYKLRKAHSIFSKINKRHFDHFSAA 152


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 9/32 (28%), Positives = 22/32 (68%)
 Frame = +1

Query: 157 DDIHQQLKXLLQSNIAIRQEMREENKDVSNSN 252
           + +H  L+ L Q+N +++ E+ E+N ++++ N
Sbjct: 532 EKLHDSLETLSQTNNSLQCEISEKNAELNSVN 563


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,913,444
Number of Sequences: 5004
Number of extensions: 33015
Number of successful extensions: 59
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)