Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_F_L08
(749 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 64 2e-11
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 48 1e-06
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 45 1e-05
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 44 3e-05
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 41 2e-04
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 40 3e-04
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 39 7e-04
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 37 0.004
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 36 0.008
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 35 0.011
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 35 0.014
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 34 0.019
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 34 0.025
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 33 0.033
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 33 0.043
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 31 0.13
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 31 0.13
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 31 0.13
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 30 0.31
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 30 0.31
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 30 0.40
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 29 0.54
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 29 0.71
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 29 0.94
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 28 1.6
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 28 1.6
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 28 1.6
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 27 2.2
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 27 2.2
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c... 27 2.9
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl... 27 3.8
SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy... 26 6.6
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 26 6.6
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 25 8.7
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 64.5 bits (150), Expect = 2e-11
Identities = 43/135 (31%), Positives = 70/135 (51%), Gaps = 14/135 (10%)
Frame = +2
Query: 155 FSTMGKLESCKLIAN-----RGYGFVEYTRPDDAVKARKAFNGLLMQNKTLKVSHALLNP 319
FS GK+ SCK+ + +GYGFV + + A A + NG+L+ +K + V H +
Sbjct: 188 FSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRR 247
Query: 320 ELKPPTKP-EADW-NLYICNLPNELTLQDLHGLFAQFGRIINSRIA-------AGIAFVL 472
E + + +A++ N+YI NL E+T Q+ LF QFG I + + G FV
Sbjct: 248 ERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVN 307
Query: 473 YEHQYEAERAIQNIN 517
Y + A++A+ +N
Sbjct: 308 YANHECAQKAVDELN 322
Score = 45.6 bits (103), Expect = 8e-06
Identities = 43/169 (25%), Positives = 72/169 (42%), Gaps = 24/169 (14%)
Frame = +2
Query: 83 EASPTKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIAN-----RGYGFVEYTRPDDAVK 247
+A+ T + + + +T+ LF G++ S L+ + RG+GFV Y + A K
Sbjct: 257 KANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQK 316
Query: 248 ARKAFNGLLMQNKTLKVSHALLNPELKPPTKPEADW------------NLYICNLPNELT 391
A N + K L V A E + + + NL+I NL +E+
Sbjct: 317 AVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVD 376
Query: 392 LQDLHGLFAQFGRIINSRI-------AAGIAFVLYEHQYEAERAIQNIN 517
+ L F+ FG I +++I + G FV Y EA +A+ +N
Sbjct: 377 DERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMN 425
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 48.4 bits (110), Expect = 1e-06
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 8/86 (9%)
Frame = +2
Query: 74 SGPEASPTKLIVNYIPE--VMTQDMMFSLFSTMGKLESCKLIA------NRGYGFVEYTR 229
S P P L V + + V + LFS G+++SC L + ++GYGFV ++
Sbjct: 412 STPTIDPCNLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSH 471
Query: 230 PDDAVKARKAFNGLLMQNKTLKVSHA 307
P +AV+A NG+L K L V++A
Sbjct: 472 PFEAVQAINTLNGVLFGKKRLFVNYA 497
Score = 39.9 bits (89), Expect = 4e-04
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 11/75 (14%)
Frame = +2
Query: 329 PPTKPEAD-WNLYICNLPNELT--LQDLHGLFAQFGRIINSRIAA--------GIAFVLY 475
P + P D NL++ NL + + Q L LF++FGRI + +A+ G FV +
Sbjct: 410 PTSTPTIDPCNLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSF 469
Query: 476 EHQYEAERAIQNING 520
H +EA +AI +NG
Sbjct: 470 SHPFEAVQAINTLNG 484
Score = 35.9 bits (79), Expect = 0.006
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 13/85 (15%)
Frame = +2
Query: 311 LNPELKPPTKPEADWNLYICNLPNELTLQDLHGLFAQFG-------------RIINSRIA 451
L+ + K TK + + ++Y+ NLP+ DLH LF FG + +S+
Sbjct: 7 LSEKNKRSTK-KCEISIYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSP 65
Query: 452 AGIAFVLYEHQYEAERAIQNINGST 526
AF+ +E++ A+ AI ++NGS+
Sbjct: 66 TLFAFITFENKCSADNAIASLNGSS 90
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 44.8 bits (101), Expect = 1e-05
Identities = 43/169 (25%), Positives = 75/169 (44%), Gaps = 24/169 (14%)
Frame = +2
Query: 89 SPTKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIAN------RGYGFVEYTRPDDAVKA 250
S + L V + QD + + FS +G ++ ++ N RGYGFV ++ +DA +A
Sbjct: 3 SNSTLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRA 62
Query: 251 RKAFNGLLMQNKTLKVSHAL----------LNPELKPPTKPEADWNLYICNLPNELTL-Q 397
K + + L++ A N +K + + L I NLP + Q
Sbjct: 63 AKELKNKKLHGRILRLDFATPRKRSEVDTDQNKAVKKTIRQDNRPRLIIRNLPWSIKKPQ 122
Query: 398 DLHGLFAQFGRIINSRI-------AAGIAFVLYEHQYEAERAIQNINGS 523
L F++FG++ +I G AFV + + AE A+ ++NG+
Sbjct: 123 HLEPHFSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNSLNGT 171
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 43.6 bits (98), Expect = 3e-05
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 13/120 (10%)
Frame = +2
Query: 203 GYGFVEYTRPDDAVKARKAFNGLLMQNKTL--KVSH----ALLNPELKPPTKPEADWNLY 364
G+GFVE+ AV A A NG ++ L K+SH A + +KP+ +
Sbjct: 666 GFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLSHQGVDAAAEVRKQDSSKPKGT-KIL 724
Query: 365 ICNLPNELTLQDLHGLFAQFGRIINSRI-------AAGIAFVLYEHQYEAERAIQNINGS 523
I NLP E T +D+ L +G++ + R+ A G AF + EA A++ + +
Sbjct: 725 IKNLPFEATKKDVQSLLGAYGQLRSVRVPKKFDRSARGFAFAEFVTAREAANAMRALKNT 784
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 40.7 bits (91), Expect = 2e-04
Identities = 44/188 (23%), Positives = 74/188 (39%), Gaps = 30/188 (15%)
Frame = +2
Query: 50 GNCQGNHXSGPEASPTKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIAN------RGYG 211
G Q N+ + + + + +P D+ + S S K+I + R YG
Sbjct: 168 GGIQHNNFVSRDPEFSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYG 227
Query: 212 FVEYTRPDDAVKARKAFNGLLMQNKTLKVSHAL--------------LNPELKPPTKPEA 349
FV ++ + A G L Q + L++S A + P +P
Sbjct: 228 FVRFSSEKEQQHALMHMQGYLCQGRPLRISVASPKSRASIAADSALGIVPTSTSNRQPNQ 287
Query: 350 DW--------NLYICNLPNELTLQDLHGLFAQFGRIINSRI--AAGIAFVLYEHQYEAER 499
D +++ L + L+ +DL F FGRI+N +I G FV Y + AE+
Sbjct: 288 DLCSMDPLNTTVFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGKGCGFVQYSEKSAAEK 347
Query: 500 AIQNINGS 523
AI + G+
Sbjct: 348 AINTMQGA 355
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 40.3 bits (90), Expect = 3e-04
Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 7/71 (9%)
Frame = +2
Query: 329 PPTKPEADWN--LYICNLPNELTLQDLHGLFAQFG-----RIINSRIAAGIAFVLYEHQY 487
PP+ + N L+I NL ++T ++++ LF ++G R+ N+ G AFV+YE+
Sbjct: 2 PPSTVNQEVNSILFIKNLSFKITAEEMYDLFGRYGPVRQIRLGNTVQTRGTAFVVYENVQ 61
Query: 488 EAERAIQNING 520
+A RA + ++G
Sbjct: 62 DARRACEKLSG 72
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 39.1 bits (87), Expect = 7e-04
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Frame = +2
Query: 101 LIVNYIPEVMTQDMMFSLFSTMGKLESCKLIA------NRGYGFVEYTRPDDAVKARKAF 262
L V + ++ + +++ FS +G+L +A ++GYGFV Y + A A +A
Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAM 160
Query: 263 NGLLMQNKTLKVSHA 307
N + NK + VS+A
Sbjct: 161 NNQFLMNKPITVSYA 175
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 36.7 bits (81), Expect = 0.004
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Frame = +2
Query: 110 NYIPEVMTQDMMFSLFSTMGKLESCKL-----IANRGYGFVEYTRPDDAVKARKAFNGLL 274
N P V T+ ++++ F G++ S L +R Y FVE+ P+DA +A + N +
Sbjct: 12 NLAPSV-TESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEFDEPEDAKEAMENMNYSI 70
Query: 275 MQNKTLKVSHA 307
+ ++ ++VS A
Sbjct: 71 LCDRCIRVSPA 81
Score = 26.2 bits (55), Expect = 5.0
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Frame = +2
Query: 359 LYICNLPNELTLQDLHGLFAQFGRIIN-------SRIAAGIAFVLYEHQYEAERAIQNIN 517
+++ NL +T L+ F FG II+ + AFV ++ +A+ A++N+N
Sbjct: 8 VHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEFDEPEDAKEAMENMN 67
Query: 518 GS 523
S
Sbjct: 68 YS 69
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 35.5 bits (78), Expect = 0.008
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +2
Query: 110 NYIPEVMTQDMMFSLFSTMGKLESCKLIANRGYGFVEYTRPDDAVKA 250
++I + +T + + + G++ES K + NR GFV YT +A+KA
Sbjct: 505 SHISDSLTTEELELILRQYGEIESIKYLKNRSSGFVAYTNISNAMKA 551
Score = 29.5 bits (63), Expect = 0.54
Identities = 17/61 (27%), Positives = 27/61 (44%)
Frame = +2
Query: 65 NHXSGPEASPTKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIANRGYGFVEYTRPDDAV 244
N S AS I N +P + + F GK+E K+++ + FV + DA+
Sbjct: 290 NFCSNTAASRNVFIGN-LPSSYHEKEIEEAFGKFGKIEHIKILSKKNIAFVHFLNIRDAI 348
Query: 245 K 247
K
Sbjct: 349 K 349
Score = 29.5 bits (63), Expect = 0.54
Identities = 16/59 (27%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Frame = +2
Query: 347 ADWNLYICNLPNELTLQDLHGLFAQFGRIINSRIAA--GIAFVLYEHQYEAERAIQNIN 517
A N++I NLP+ +++ F +FG+I + +I + IAFV + + +A + ++ ++
Sbjct: 297 ASRNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKNIAFVHFLNIRDAIKVVRTLS 355
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 35.1 bits (77), Expect = 0.011
Identities = 34/158 (21%), Positives = 72/158 (45%), Gaps = 16/158 (10%)
Frame = +2
Query: 95 TKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIANR------GYGFVEYTRPDDAVKARK 256
T L + + +T+ + +++T+GK KLI NR GY FVE+ P +A A
Sbjct: 93 TTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAMS 152
Query: 257 AFNGLLM-QNKTLKVSHALLNPELKPPTKPEADWNLYICNLPNELTLQDLHGLFA----- 418
N + N K++ A + +++++++ +L + D++ LFA
Sbjct: 153 MNNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNS 212
Query: 419 -QFGRII---NSRIAAGIAFVLYEHQYEAERAIQNING 520
+ +I+ + ++ G FV + + + + A+ + G
Sbjct: 213 CKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQG 250
Score = 31.9 bits (69), Expect = 0.10
Identities = 40/179 (22%), Positives = 75/179 (41%), Gaps = 33/179 (18%)
Frame = +2
Query: 83 EASPTKLIVNYIPEVMTQDMMFSLF-STMGKLESCKLIAN------RGYGFVEYTRPDDA 241
+AS + V + + + ++SLF S +S K++ + RGYGFV +T +D
Sbjct: 182 KASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQ 241
Query: 242 VKARKAFNGLLMQNKTLKV--------SHALLNPELKPPTKP----------------EA 349
A G + ++ ++V +H + P + P A
Sbjct: 242 KSALAEMQGQICGDRPIRVGLATPKSKAHVFSPVNVVPVSMPPVGFYSAAQPVPQFADTA 301
Query: 350 DWNLYICNLPNELTLQDLHGLFAQFGRIINSRI--AAGIAFVLYEHQYEAERAIQNING 520
+ +++ L ++ ++L LF FG I+ +I G FV + ++ AE AI + G
Sbjct: 302 NSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAINQLQG 360
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 34.7 bits (76), Expect = 0.014
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Frame = +2
Query: 92 PTKLIVNYIPE--VMTQDMMFSLFSTMGKLESCKLIA------NRGYGFVEYTRPDDAVK 247
P+ L V + + + + + LFS G + S L ++GYGFV + + + AV+
Sbjct: 381 PSNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVR 440
Query: 248 ARKAFNGLLMQNKTLKVSHA 307
A+ NG+++ K + V A
Sbjct: 441 AKDTLNGMMVGKKRIFVCFA 460
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 34.3 bits (75), Expect = 0.019
Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 8/124 (6%)
Frame = +2
Query: 167 GKLESCKLIANRGYGFVEYTRPDDAVKARKAFN--GLLMQNKTLKVS---HA-LLNPELK 328
G L + + + + FV + P A + + N GL+++N+ LK+ H+ L +
Sbjct: 346 GLLHNIRYLQEKHICFVTFVDPVSAFRFFEMSNIHGLVIRNRRLKIGWGKHSGPLPSNIA 405
Query: 329 PPTKPEADWNLYICNLPNELTLQDLHGLFAQFGRI--INSRIAAGIAFVLYEHQYEAERA 502
A N+YI N + LT++ L F +FG I +N AFV + A A
Sbjct: 406 LAVAGGASRNIYIGNADDSLTIERLKEDFEEFGEIEYVNFFREKNCAFVNFTSLASAINA 465
Query: 503 IQNI 514
I I
Sbjct: 466 IDRI 469
Score = 25.8 bits (54), Expect = 6.6
Identities = 11/45 (24%), Positives = 21/45 (46%)
Frame = +2
Query: 116 IPEVMTQDMMFSLFSTMGKLESCKLIANRGYGFVEYTRPDDAVKA 250
+P +T+D + G ++ K++ R FV + A+KA
Sbjct: 213 LPNGITEDEIREDLEPFGPIDQIKIVTERNIAFVHFLNIAAAIKA 257
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 33.9 bits (74), Expect = 0.025
Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 14/122 (11%)
Frame = +2
Query: 197 NRGYGFVEYTRPDDAVKARKAFNGLLMQNKTLKV-----SHALLNPELKP--PTKPEADW 355
+RG G V + +A+ A + + +TL+V +H + + P P +D
Sbjct: 222 SRGIGIVVMSSMKEAMHAIQMLHNTDFMGRTLEVRLDRFAHHKIEDLVYHAYPHGPCSDC 281
Query: 356 NLYICNLPNELTLQDLHGLFAQFGRIINSRIA-------AGIAFVLYEHQYEAERAIQNI 514
+Y+ NLP + ++L LF G +I +RIA G V +E++ +A +I+ +
Sbjct: 282 -IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKL 340
Query: 515 NG 520
NG
Sbjct: 341 NG 342
Score = 28.3 bits (60), Expect = 1.2
Identities = 15/74 (20%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Frame = +2
Query: 101 LIVNYIPEVMTQDMMFSLFSTMGKLESCKLI-----ANRGYGFVEYTRPDDAVKARKAFN 265
+ V +P + + LF+ +G + ++ ++G+G V++ +DA + + N
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLN 341
Query: 266 GLLMQNKTLKVSHA 307
G + L++S+A
Sbjct: 342 GYRYGGRPLQLSYA 355
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 33.5 bits (73), Expect = 0.033
Identities = 41/159 (25%), Positives = 62/159 (38%), Gaps = 14/159 (8%)
Frame = +2
Query: 131 TQDMMFSLFST-MGKLESCKLIAN------RGYGFVEYTRPDDAVKARKAFNGLLMQNKT 289
T D L++ GK+ S K I + +GYGF + A+ A Q
Sbjct: 307 TSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFACFEEEKSALICISAMTLCGYQCSF 366
Query: 290 LKVSHALLNPELKPPTKPEADWNLYICNLPNELTLQDLHGLFAQFGRIINSRI------- 448
K S + L+ NLYI NLP D+ LF +II++R+
Sbjct: 367 AKESFSARLQSLQDTEST----NLYISNLPLHWNESDISTLFKP-SKIISNRVLRDSKEQ 421
Query: 449 AAGIAFVLYEHQYEAERAIQNINGSTPPEFLHPLTVKYA 565
+ G+ F + + AE I N L PL +++A
Sbjct: 422 SRGVGFARMQDRKTAEDIINKFNNFVLDPALPPLQIRFA 460
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 33.1 bits (72), Expect = 0.043
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Frame = +2
Query: 98 KLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIANR-----GYGFVEYTRPDDAVKARKAF 262
+L V + + + ++ FS L K++ +R G+GFV + D +KA +
Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLKAWREK 90
Query: 263 NGLLMQNKTLKVSHALLNPELKP 331
NG + ++ +K+S A ++KP
Sbjct: 91 NGKYIGSRPVKLSRA--TSDVKP 111
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 31.5 bits (68), Expect = 0.13
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Frame = +2
Query: 101 LIVNYIPEVMTQDMMFSLFSTMGKLESCKLIANR------GYGFVEYTRPDDAVKARKAF 262
+IV + T++ + LF+ G +++ L +R GY +EY + A KA
Sbjct: 12 IIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAVDEK 71
Query: 263 NGLLMQNKTLKVSHALLNPELKPP 334
N L+ K L+V A L P + P
Sbjct: 72 NLSLLDEK-LEVDFAFLEPPERAP 94
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 31.5 bits (68), Expect = 0.13
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
Frame = +2
Query: 77 GPEASPTKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLI------ANRGYGFVEYTRPDD 238
G E L V+ I M +D + +FS G + +++ A+RG+GF+ ++ ++
Sbjct: 95 GSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEE 154
Query: 239 AVKARKAFNGLLMQNKTLKVSHA 307
A A N + L V A
Sbjct: 155 ATSAIDNLNSQEFYGRVLNVQKA 177
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 31.5 bits (68), Expect = 0.13
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = +2
Query: 446 IAAGIAFVLYEHQYEAERAIQNINGST 526
+ +GIAFV + +Q + ++AI+ +NG T
Sbjct: 87 VPSGIAFVTFNNQEDVDKAIETLNGKT 113
Score = 29.1 bits (62), Expect = 0.71
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +2
Query: 200 RGYGFVEYTRPDDAVKARKAFNGLLMQNKTLKVSHALLNPE 322
RG+GFV + +D +A + NG + + TL V A+ +
Sbjct: 258 RGFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSAVFRED 298
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 30.3 bits (65), Expect = 0.31
Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Frame = +2
Query: 155 FSTMGKLESCKLIAN---RGYGFVEYTRPDDAVKARKAFNGLLMQNKTLKVSHALLNPEL 325
F G L K++ + R Y FV++ DDA KA ++ + +++ A +N +
Sbjct: 103 FQQWGPLLHVKVLKDWLQRPYSFVQFQNTDDASKALSEAQNTILDGRHIRIERAKVNRTI 162
Query: 326 KPPTKP 343
+ + P
Sbjct: 163 RISSAP 168
Score = 27.9 bits (59), Expect = 1.6
Identities = 24/84 (28%), Positives = 32/84 (38%), Gaps = 4/84 (4%)
Frame = +2
Query: 80 PEASPTKLIVNYIPEV-MTQDMMFSLFSTMGKLESCKLIANRGYGFVEYTRPDDAVKARK 256
P P + V + V T ++ LFS GK+ CK+I + R D A
Sbjct: 360 PPIDPYSIFVGQLDPVNCTHYLLVDLFSKYGKVIDCKIIHQSKKPAFAFLRFDSQQAAYA 419
Query: 257 AFNGLLM---QNKTLKVSHALLNP 319
A G Q K L+V L P
Sbjct: 420 AVCGKTRSPHQKKPLRVEFRQLRP 443
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 30.3 bits (65), Expect = 0.31
Identities = 17/65 (26%), Positives = 33/65 (50%)
Frame = +2
Query: 101 LIVNYIPEVMTQDMMFSLFSTMGKLESCKLIANRGYGFVEYTRPDDAVKARKAFNGLLMQ 280
L + I + + ++ S+F G ++S L N +GF++ R D A KA+ A +
Sbjct: 408 LFLGGITRSVREPVLRSMFERFGSVQSLILNHNYRHGFLKMFRRDAAEKAQVAMENVPFA 467
Query: 281 NKTLK 295
+ T++
Sbjct: 468 DTTIR 472
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 29.9 bits (64), Expect = 0.40
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 6/80 (7%)
Frame = +2
Query: 77 GPEASPTKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIAN------RGYGFVEYTRPDD 238
G + PT ++V IP + +D + F +G + RG F + RP++
Sbjct: 196 GEDTIPTAIVVKNIPFSLEKDTLLDHFKQLGIPRPYAFNYHYDNGIFRGLAFANFYRPEE 255
Query: 239 AVKARKAFNGLLMQNKTLKV 298
A + NG + + L+V
Sbjct: 256 AQVVVQTLNGYEINGRRLRV 275
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 29.5 bits (63), Expect = 0.54
Identities = 17/72 (23%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Frame = +2
Query: 98 KLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIAN-----RGYGFVEYTRPDDAVKARKAF 262
+L V+ I +T + + ++F G +E L + +G+G+++Y P A A +
Sbjct: 341 RLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKM 400
Query: 263 NGLLMQNKTLKV 298
NG + + ++V
Sbjct: 401 NGFDLAGRNMRV 412
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 29.1 bits (62), Expect = 0.71
Identities = 19/81 (23%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Frame = +2
Query: 95 TKLIVNYIPEVMTQDMMFSLF-STMGKLESCKLI-----ANRGYGFVEYTRPDDAVKARK 256
+K+IV+ +P +T+ + LF ++G + L ++G + ++RP DA +A +
Sbjct: 55 SKIIVSNLPTDVTEAQVKELFVKSIGPCKRVSLAYGPNGRSKGIATIIFSRPGDATRAYE 114
Query: 257 AFNGLLMQNKTLKVSHALLNP 319
+ G L+ +L+P
Sbjct: 115 QYEGRLVDGTRKMKVEIILDP 135
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 28.7 bits (61), Expect = 0.94
Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Frame = +2
Query: 65 NHXSGPEASPTKLIVNYI-PEVMTQDMMFSLFSTMGKLESCKLIANRGYGFVEYTRPDDA 241
N G S ++L + ++ + +++ ++ +F G L L AN YGFV++ +D
Sbjct: 353 NWYPGQFPSASRLFLGHLNTKSLSKRNLWKVFKIYGPLAQIVLKAN--YGFVQFFTNEDC 410
Query: 242 VKARKAFNGLLMQNKTL 292
+A A G ++ + L
Sbjct: 411 ARALNAEQGNFVRGQKL 427
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 27.9 bits (59), Expect = 1.6
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 6/80 (7%)
Frame = +2
Query: 80 PEASPTKLIVNYIPEVMTQDMMFSLFSTMGKLESC------KLIANRGYGFVEYTRPDDA 241
PE ++V + +T++ + +F G ++ K N+GY ++EY D A
Sbjct: 94 PEEPLRTILVENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEYVYHDQA 153
Query: 242 VKARKAFNGLLMQNKTLKVS 301
A N + + L VS
Sbjct: 154 ANAVDKMNNAELDGEELFVS 173
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 27.9 bits (59), Expect = 1.6
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 350 DWNLYICNLPNELTLQDLHGLFAQFGRIINSR 445
D NLY+ N P D+ LF+ +G +++ R
Sbjct: 665 DTNLYVTNFPPTYDELDITKLFSAYGNVVDVR 696
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 27.9 bits (59), Expect = 1.6
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Frame = +2
Query: 155 FSTMGKLESCKLIANR------GYGFVEYTRPDDAVKARKAFNGLLMQNKTLKV 298
F+ G +E +++ N+ GY FV + R D A KA GL++ + + V
Sbjct: 120 FTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKASAGLMLNGRRIVV 173
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 27.5 bits (58), Expect = 2.2
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Frame = +2
Query: 128 MTQDMMFSL-FSTMGKLESCKLIANR------GYGFVEYTRPDDAVKARKAFNGLLMQNK 286
+TQD L FS GK+ SC++I ++ Y F+E+ + KA +L+ +
Sbjct: 254 VTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKMQNVLIDDS 313
Query: 287 TLKV 298
+ V
Sbjct: 314 RIHV 317
Score = 26.2 bits (55), Expect = 5.0
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +2
Query: 359 LYICNLPNELTLQDLHGLFAQFGRIINSRI 448
L++C L +DL +F++FG+II+ ++
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQV 275
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 27.5 bits (58), Expect = 2.2
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 8/60 (13%)
Frame = +2
Query: 359 LYICNLPNELTLQDLHGLFAQFGRIINSRI--------AAGIAFVLYEHQYEAERAIQNI 514
+YI NL +L D+ +F++FG ++ + + G AF+ YE Q A+ N+
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNM 92
>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1111
Score = 27.1 bits (57), Expect = 2.9
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Frame = +2
Query: 248 ARKAFNGLLMQNKTLKVSHALLNPE-LKPPTK----PEADWNLYICNLPNEL 388
ARKA + + NK + + A L PE + T P + +Y N+PNEL
Sbjct: 300 ARKALQSIDLSNKKVCMIAATLRPETMYGQTNCYVGPNITYGIYESNVPNEL 351
>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 26.6 bits (56), Expect = 3.8
Identities = 24/97 (24%), Positives = 40/97 (41%)
Frame = +2
Query: 65 NHXSGPEASPTKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIANRGYGFVEYTRPDDAV 244
N S P ++P+ + + P T S F+T L + GY + + R V
Sbjct: 427 NQLSIPSSTPSTPLSDNGPTYSTPHSSLSNFNTCDSLSFSSNNSLYGYSTLLHPRNPICV 486
Query: 245 KARKAFNGLLMQNKTLKVSHALLNPELKPPTKPEADW 355
+ R G LM ++T + L+ KP ++ E W
Sbjct: 487 RQRIGRGGRLMLDRTRALPVHRLS---KPKSRVEDRW 520
>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 25.8 bits (54), Expect = 6.6
Identities = 11/31 (35%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +2
Query: 92 PTKLI-VNYIPEVMTQDMMFSLFSTMGKLES 181
P++ + VN+ ++Q+ ++S+F T GKL S
Sbjct: 161 PSRTVDVNFEGPPLSQERLYSIFRTYGKLRS 191
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 25.8 bits (54), Expect = 6.6
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 197 NRGYGFVEYTRPDDAVKARKAFNG 268
++GYG+V++ P +A KA A NG
Sbjct: 303 SKGYGYVDFETP-EAAKAAVAANG 325
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 25.4 bits (53), Expect = 8.7
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +2
Query: 359 LYICNLPNELTLQDLHGLFAQFGRI 433
LY+ NLP + +H LF+ +G +
Sbjct: 2 LYVSNLPVGTSSSAIHALFSAYGNV 26
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,811,050
Number of Sequences: 5004
Number of extensions: 53046
Number of successful extensions: 197
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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