Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_F_L06
(818 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.14c |btf3|egd1, btt1, nac2|nascent polypeptide-associat... 111 1e-25
SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4 |Schizosacc... 30 0.45
SPAC6G10.03c |||abhydrolase family protein, unknown biological r... 29 1.0
SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|... 27 2.4
SPBC24C6.05 |sec28||coatomer epsilon subunit |Schizosaccharomyce... 27 2.4
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc... 27 4.2
SPAC57A7.10c |sec21||coatomer gamma subunit Sec21 |Schizosacchar... 26 7.4
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p... 25 9.8
SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual 25 9.8
>SPAC4F10.14c |btf3|egd1, btt1, nac2|nascent polypeptide-associated
complex beta subunit|Schizosaccharomyces pombe|chr
1|||Manual
Length = 151
Score = 111 bits (267), Expect = 1e-25
Identities = 64/149 (42%), Positives = 84/149 (56%), Gaps = 8/149 (5%)
Frame = +3
Query: 162 MNSEKLKKLQSQVRIGGKGTPRRKKKVVHVTA--ATDDXXXXXXXXXXXVNTIPGIEEVN 335
M+ KL KLQ+ RIGGKGTPRRK K +A A DD + + GI+EVN
Sbjct: 1 MDPSKLAKLQAGARIGGKGTPRRKVKKPSKSAMSAADDKKVQGALKKLNMQNLAGIQEVN 60
Query: 336 MIKEDGTVIHFNNPKAQASLAANTFAITGHGENKQTTEMLPGILSQLGPDGLNRLKRIAS 515
M KEDG VI+F P +SL T AI G E K +E+LPGIL+ LGP+ L L+++A
Sbjct: 61 MFKEDGGVINFRAPTVHSSLPNETTAIYGKAEEKTLSEILPGILNNLGPESLTALRQMAE 120
Query: 516 SVAAPK------PLEEDDEVPNLVGNFDE 584
+ + +D E+P+LV FDE
Sbjct: 121 QLKVSEGEKGADAQADDGEIPDLVEKFDE 149
>SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 488
Score = 29.9 bits (64), Expect = 0.45
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +2
Query: 710 FAHLHVKGFRSHLCLKRMIFTXISLRSWVYELHHVL 817
+ H++VK +S C+ + + IS W+ ELH +L
Sbjct: 441 YVHIYVKSSKSWRCMSQTHVSSISNLVWLNELHQLL 476
>SPAC6G10.03c |||abhydrolase family protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 428
Score = 28.7 bits (61), Expect = 1.0
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -1
Query: 545 FLEWLRRGNTRRNPFQSVQAVGSELAEDT 459
F++WL GN+ R PF SE E+T
Sbjct: 126 FVDWLGMGNSSRPPFDIKGQTASEKVEET 154
>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 27.5 bits (58), Expect = 2.4
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +3
Query: 99 NSVIKKCPVLTLTQFTLKNSRMNSEKLKKLQSQVRIGG-KGTPRRKKKV 242
NSV++K + NSR+NS + S V + G G+P K+K+
Sbjct: 131 NSVVEKISQKNQEARSRANSRVNSRANSRANSSVSLAGMDGSPNWKRKM 179
>SPBC24C6.05 |sec28||coatomer epsilon subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 288
Score = 27.5 bits (58), Expect = 2.4
Identities = 16/73 (21%), Positives = 32/73 (43%)
Frame = +3
Query: 378 KAQASLAANTFAITGHGENKQTTEMLPGILSQLGPDGLNRLKRIASSVAAPKPLEEDDEV 557
+ + +L++ A+ ++ + ++ LGPD ++ K I SS L+ +D +
Sbjct: 211 RPEEALSSLKTALDSQPNYEEALSNMTTAITDLGPDAPSQAKNILSSFTNSSTLKLNDHL 270
Query: 558 PNLVGNFDEASKQ 596
FD S Q
Sbjct: 271 NEKAQEFDTFSTQ 283
>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 997
Score = 26.6 bits (56), Expect = 4.2
Identities = 14/45 (31%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = +3
Query: 465 LSQLGPDGLNRLKRIASSVAAPKPLEEDDEVPNLVGNF-DEASKQ 596
+S +G + + K++A + +E++DE NL G+F +E++KQ
Sbjct: 420 VSSVGKEQNHTEKQVAIETPEQQKVEKEDEHLNLQGSFIEESTKQ 464
>SPAC57A7.10c |sec21||coatomer gamma subunit Sec21
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 25.8 bits (54), Expect = 7.4
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = +2
Query: 5 RPMPFVTNRCSKHVHTIKLHGKLVLSR--LVITK*RHKK 115
+P+ N K VH +KL GKLV L + K H K
Sbjct: 840 QPLEGTENPTDKPVHVMKLSGKLVNGEKVLALVKMAHSK 878
>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 25.4 bits (53), Expect = 9.8
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +3
Query: 150 KNSRMNSEKLKKLQSQVRIGGKGTPRRKKKV 242
K + +KLKK ++++ T +RK+KV
Sbjct: 148 KEKKEKKDKLKKKSKRLKLDDSHTQKRKRKV 178
>SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 381
Score = 25.4 bits (53), Expect = 9.8
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 505 GLRRVLPRLSHSRKTTRYLTSSATLTKPQ 591
GL+R RL H K+TRY+ ++A + +
Sbjct: 26 GLKRFGCRLYHHSKSTRYIDATAKVVSQE 54
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,923,553
Number of Sequences: 5004
Number of extensions: 53109
Number of successful extensions: 146
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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