Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_L06
         (818 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59530| Best HMM Match : NAC (HMM E-Value=4.6e-05)                   60   2e-09
SB_26449| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.28 
SB_57498| Best HMM Match : Gene66 (HMM E-Value=7.7)                    29   4.5  
SB_3341| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.0  
SB_56761| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_53017| Best HMM Match : Kazal_1 (HMM E-Value=0)                     28   7.9  

>SB_59530| Best HMM Match : NAC (HMM E-Value=4.6e-05)
          Length = 98

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 27/33 (81%), Positives = 28/33 (84%)
 Frame = +3

Query: 303 VNTIPGIEEVNMIKEDGTVIHFNNPKAQASLAA 401
           VN IPGIEEVNMIKEDGTVIHFNNPKA+    A
Sbjct: 54  VNPIPGIEEVNMIKEDGTVIHFNNPKAEMGSGA 86


>SB_26449| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 41

 Score = 33.1 bits (72), Expect = 0.28
 Identities = 14/18 (77%), Positives = 15/18 (83%)
 Frame = +3

Query: 540 EEDDEVPNLVGNFDEASK 593
           +EDDEVP LV NFDE SK
Sbjct: 10  DEDDEVPELVENFDEPSK 27


>SB_57498| Best HMM Match : Gene66 (HMM E-Value=7.7)
          Length = 335

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 142 NCVNVKTGHFFMTLFSYYKTRQYEFSM*LDRMH 44
           NC+    GH   T++ +Y   +YE SM + R H
Sbjct: 139 NCLWTLFGHTLRTVYRHYSDTRYELSMDVIRTH 171



 Score = 28.3 bits (60), Expect = 7.9
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -2

Query: 142 NCVNVKTGHFFMTLFSYYKTRQYEFSM*LDRMHVF*T 32
           NC+    GH   T++  Y   +YE SM + R H   T
Sbjct: 244 NCLWTLFGHTLRTVYGRYSDTRYELSMDVIRTHTLRT 280


>SB_3341| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 552

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = -3

Query: 798 YTQERNEXKVKIILLRHRWLRKPLTCR*AN*NYTCG*FNQF 676
           YT E +E K K   L  +W+   L+   AN  Y CG  N F
Sbjct: 330 YTPEVSEEKRKRRRLERKWVSTGLSTDRANYAYQCGVVNNF 370


>SB_56761| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 633

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 30/115 (26%), Positives = 44/115 (38%), Gaps = 5/115 (4%)
 Frame = +3

Query: 111 KKCPV--LTLTQFTLKNSRMNS--EKLKKLQSQVRIGGKGTPRRKKKVVHVTAATDDXXX 278
           KK P   L  T + L  S++ +  E +    S+      G   ++ K V  T  TDD   
Sbjct: 123 KKVPASKLDTTSYELDGSKIGTVPESINSYDSE-----PGMKEKESKCVETTDTTDDGTK 177

Query: 279 XXXXXXXXVNTIPGIEEVNMIKED-GTVIHFNNPKAQASLAANTFAITGHGENKQ 440
                     T PG + + +IKE        NN K   ++  +   I   GEN Q
Sbjct: 178 TMNDLSENSETTPG-QTITIIKEHMPNTPQENNSKVDTTIGQSK-EIVVEGENTQ 230


>SB_53017| Best HMM Match : Kazal_1 (HMM E-Value=0)
          Length = 1488

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = -3

Query: 231 CVSVCP-YRRCVLATGVSLIFRCSFCC 154
           C S+C  Y RCV+   V++   CS  C
Sbjct: 639 CTSICHRYGRCVMLANVTMFCNCSRAC 665


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,872,252
Number of Sequences: 59808
Number of extensions: 444107
Number of successful extensions: 1186
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1184
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2287608719
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)