Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_L04
         (394 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa...    28   0.59 
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch...    26   2.4  
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    26   2.4  
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam...    25   3.2  

>SPAC32A11.03c |phx1||homeobox transcription factor
           Phx1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 27.9 bits (59), Expect = 0.59
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = -1

Query: 265 SIAFKIAFWLSISERSKCMGPSRCRQNSQEVSRRNMQSTQQVKYTQRQLGRCRQ 104
           +I  KI   L+I ERS  +     R  S+ +SRR  +  Q++   QR+L    Q
Sbjct: 194 AIREKIGRELNIPERSVTIWFQNRRAKSKLISRRQEEERQRILREQRELDSLNQ 247


>SPAC7D4.11c |sec39||secretory pathway protein Sec39
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 769

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +3

Query: 165 RLLTSWLFCLHLLGPIHLLRSLIDNQKAILNAIEFRLCD-TVTNYIQL 305
           +L + WLF L     ++LL SLI N+K       ++L D T  N++ L
Sbjct: 5   KLESKWLFSLTESQKLYLLISLIINKKLPEAKFVYKLLDYTKGNWLSL 52


>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -1

Query: 193 RQNSQEVSRRNMQSTQQVKYTQRQLGR 113
           +Q +Q+  + N  S QQ++Y   +LG+
Sbjct: 541 KQRNQKFLKNNATSIQQIQYLDEELGK 567


>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = -1

Query: 268 NSIAFKIAFWLSISERSKCMGPSRCRQNSQE--VSRRNMQSTQQVKYT 131
           N I   I   L   ERS+ + PS C + SQ   VS+    ST  + +T
Sbjct: 54  NRIHSAIQMTLCDFERSQILAPSECVRGSQSECVSKLESTSTWWLSFT 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 900,612
Number of Sequences: 5004
Number of extensions: 13023
Number of successful extensions: 35
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)