Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_L04
         (394 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0939 + 26131405-26131596,26132753-26133166                       30   0.76 
04_03_0825 - 20092781-20092801,20092844-20093079,20093166-200932...    29   1.0  
12_02_1012 - 25281820-25281987,25282337-25282409,25283370-252834...    29   1.3  

>06_03_0939 + 26131405-26131596,26132753-26133166
          Length = 201

 Score = 29.9 bits (64), Expect = 0.76
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -1

Query: 250 IAFWLSISERSKCMGPSRCRQNSQEVSRRNMQSTQQVKYTQR 125
           +A+W ++SER  C   + C    QEV+  + QS  +++   R
Sbjct: 61  VAWWKAVSERGDCTYGTTCLFVPQEVTGGSPQSISRIRVAAR 102


>04_03_0825 -
           20092781-20092801,20092844-20093079,20093166-20093244,
           20093344-20093482,20093533-20093624,20093714-20093830,
           20093930-20094041,20094154-20094260,20094351-20094427,
           20094517-20094598,20094702-20094839,20095495-20095608
          Length = 437

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +3

Query: 180 WLFCLHLLGPIHLLRSLIDNQKAILNAIEFRLCDTVT 290
           WL C+HL  P   L  L+D+  A L AI     D VT
Sbjct: 26  WLTCVHLFMPEMPLMILVDDAGAFLPAINHSPWDGVT 62


>12_02_1012 -
           25281820-25281987,25282337-25282409,25283370-25283420,
           25283523-25283932,25284083-25284413,25285340-25285439,
           25287091-25287370
          Length = 470

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +3

Query: 15  STLINMFKYLVVRCYSCVCCRKAF--GV*VPSCLHRPSCRCVY 137
           S ++ + + L+ RC +C  CR+       V  CLH    +C+Y
Sbjct: 58  SEVVMVKRELLARCMTCPLCRRILRDATTVSECLHTFCRKCIY 100


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,695,165
Number of Sequences: 37544
Number of extensions: 88077
Number of successful extensions: 249
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 249
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)