Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_L04
         (394 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39926| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.3  
SB_49043| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.1  
SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.4  
SB_12882| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.4  
SB_28212| Best HMM Match : C1_3 (HMM E-Value=0.59)                     27   5.4  
SB_17049| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.4  
SB_59684| Best HMM Match : C1_3 (HMM E-Value=8.3)                      27   7.2  
SB_17543| Best HMM Match : Keratin_B2 (HMM E-Value=1.9)                26   9.5  
SB_15903| Best HMM Match : Gate (HMM E-Value=6)                        26   9.5  

>SB_39926| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 49

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -1

Query: 289 VTVSHNRNSIAFKIAFWLSISERSKCMG 206
           VT+S N   +A   AFWLS++ R KC G
Sbjct: 20  VTLSQN---VAIVTAFWLSVTGREKCGG 44


>SB_49043| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 487

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = -1

Query: 274 NRNSIAFKIAFWLSISERSKCMGPSRCRQNSQEVSRRNMQSTQQVKYTQRQLG 116
           N+ S+A     W SI +  KC G S+    S   + +  +  QQ  Y+ R  G
Sbjct: 228 NKESLAGAEILWASIQDTQKCHG-SKIVMKSTNCAIKLPKHCQQFNYSVRAYG 279


>SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3066

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = +3

Query: 168 LLTSWLFCLHLLGPIHLLRSLIDNQKAILNAIEFRLCDTVTNYIQL 305
           LL  W +C       +LL +L DN+  + + +  + C  +   +QL
Sbjct: 256 LLMGWRYCYSCENAQNLLDALWDNEAPVSHPVFHQACQKLAYQVQL 301


>SB_12882| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 320

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +3

Query: 60  SCVCCRKAFGV*VPSCLHRPSCRCVYFTCCVLCIFRLLT--SWLFC 191
           SC C  +A  V   SCL+R   R V F+CCV  +  + T    LFC
Sbjct: 259 SCPC--RAVSV---SCLYRAVPRIVSFSCCVRVVLVVSTFVCALFC 299


>SB_28212| Best HMM Match : C1_3 (HMM E-Value=0.59)
          Length = 218

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
 Frame = +3

Query: 45  VVRCYSC--VCCRKAFGV*VPSCLHRPSCRCVYFTCCVLCIFR 167
           V+RC +C  +CC   F +   +C       C    C   C+ R
Sbjct: 88  VMRCVACRVMCCVACFVMHCVACCVMRCVACCVMRCVACCVMR 130



 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
 Frame = +3

Query: 45  VVRCYSC--VCCRKAFGV*VPSCLHRPSCRCVYFTCCVLCIFR 167
           V+RC  C  +CC   F +   +C       C    C   C+ R
Sbjct: 16  VMRCVGCRVMCCVACFVMHCVACCVMRCVACCVMRCVACCVMR 58


>SB_17049| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 548

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 12/56 (21%)
 Frame = +3

Query: 144 CCVLCIF--RLLTSWL----------FCLHLLGPIHLLRSLIDNQKAILNAIEFRL 275
           CC+L +   +L TSWL          FC HLL P+  +   I ++KA  + I+ ++
Sbjct: 296 CCILILTSDKLATSWLTKFESFLFERFCEHLLNPMMQVHYKIVSEKATSSNIQTKI 351


>SB_59684| Best HMM Match : C1_3 (HMM E-Value=8.3)
          Length = 138

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
 Frame = +3

Query: 45  VVRCYSC--VCCRKAFGV*VPSCLHRPSCRCVYFTCCVLCIFR 167
           V+RC  C  +CC   F +   +C       C    C   C+ R
Sbjct: 8   VMRCVGCRVMCCVACFVMHCVACCVMRCVACCVMRCVACCVMR 50


>SB_17543| Best HMM Match : Keratin_B2 (HMM E-Value=1.9)
          Length = 229

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
 Frame = +3

Query: 111 HRPSCRCVYFTC----CVLCIFRLLTSWLFCLHLLGPIHLLRS 227
           HRP  + VYFTC    C  C F ++   L C     P+  L +
Sbjct: 33  HRPHMQDVYFTCHRPTCKTCTFPVIA--LTCKTCTSPVTALHA 73


>SB_15903| Best HMM Match : Gate (HMM E-Value=6)
          Length = 444

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +3

Query: 183 LFCLHLLGPIHLLRSLIDNQKAILNAIEFRLCDTVTNYIQLK 308
           L C   LG + ++ +L+D+    L    +R+C  V  +++ K
Sbjct: 186 LECARTLGILRVIPNLLDHPTKYLKLDNYRICIAVDAFLESK 227


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,087,830
Number of Sequences: 59808
Number of extensions: 115428
Number of successful extensions: 2212
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2209
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 678472135
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)