Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_F_L04
(394 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK095631-1|BAC04594.1| 134|Homo sapiens protein ( Homo sapiens ... 31 1.4
AK128694-1|BAC87575.1| 291|Homo sapiens protein ( Homo sapiens ... 30 3.1
Y00479-1|CAA68539.1| 490|Homo sapiens protein ( H.sapiens mRNA ... 29 4.1
X55074-2|CAB57886.1| 490|Homo sapiens thyroid hormone receptor ... 29 4.1
X55074-1|CAA38899.1| 410|Homo sapiens thyroid hormone receptor ... 29 4.1
X55005-1|CAA38749.1| 410|Homo sapiens thyriod hormone receptor ... 29 4.1
M24899-1|AAA35783.1| 490|Homo sapiens triiodothyronine receptor... 29 4.1
M24748-2|AAA66021.1| 410|Homo sapiens thyroid receptor alpha-1 ... 29 4.1
J03239-1|AAA61176.1| 490|Homo sapiens thyroid hormone receptor ... 29 4.1
CR541915-1|CAG46713.1| 410|Homo sapiens THRA protein. 29 4.1
BC035137-1|AAH35137.1| 451|Homo sapiens THRA protein protein. 29 4.1
BC008851-1|AAH08851.1| 410|Homo sapiens THRA protein protein. 29 4.1
BC002728-1|AAH02728.1| 490|Homo sapiens thyroid hormone recepto... 29 4.1
BC000261-1|AAH00261.1| 490|Homo sapiens thyroid hormone recepto... 29 4.1
AK128797-1|BAC87611.1| 201|Homo sapiens protein ( Homo sapiens ... 29 4.1
AB209346-1|BAD92583.1| 397|Homo sapiens thyroid hormone recepto... 29 4.1
BC117184-1|AAI17185.1| 1388|Homo sapiens retrotransposon gag dom... 29 7.2
BC113670-1|AAI13671.1| 1388|Homo sapiens retrotransposon gag dom... 29 7.2
AY121804-1|AAM82752.1| 1388|Homo sapiens BJ-HCC-23 tumor antigen... 29 7.2
AM231187-1|CAJ77183.1| 542|Homo sapiens autogenous vein graft r... 29 7.2
AK128416-1|BAC87430.1| 303|Homo sapiens protein ( Homo sapiens ... 29 7.2
AB037739-1|BAA92556.1| 1418|Homo sapiens KIAA1318 protein protein. 29 7.2
>AK095631-1|BAC04594.1| 134|Homo sapiens protein ( Homo sapiens
cDNA FLJ38312 fis, clone FCBBF3021506. ).
Length = 134
Score = 31.1 bits (67), Expect = 1.4
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Frame = +3
Query: 63 CVC-CRKAFGV*VPSCLHRPSCRCVYFTCCV-LCIFRLLTSWLFCLHL 200
CVC CR V + C+ P C CVY V +C+ + C H+
Sbjct: 7 CVCMCRWCLCVCIYMCVCVPVCMCVYVCVYVRICVICVCVCVFVCAHM 54
>AK128694-1|BAC87575.1| 291|Homo sapiens protein ( Homo sapiens
cDNA FLJ46861 fis, clone UTERU3011092. ).
Length = 291
Score = 29.9 bits (64), Expect = 3.1
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Frame = +3
Query: 27 NMFKYLVVRCYSCV------CCRKAFGV*VPSCLHRPSCRCVY-FTCCVLCIFRLLTSWL 185
+M Y+ + Y+C+ C A+ V S +H + CV+ +TC +CI + T
Sbjct: 130 HMHTYMCIHMYTCIHICVFMCTMHAY---VYSYVHMHAYVCVHMYTCVHMCIHKY-TCMH 185
Query: 186 FCLHLLGPIH 215
C+H+ IH
Sbjct: 186 MCIHMYTCIH 195
>Y00479-1|CAA68539.1| 490|Homo sapiens protein ( H.sapiens mRNA for
thyroid hormone receptor. ).
Length = 490
Score = 29.5 bits (63), Expect = 4.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 51 RCYSCVCCRKAFGV*VPSCLHRPSCRCVYFTCCVL 155
RC +C C+ F + LH P+ C Y +CCV+
Sbjct: 66 RCITCEGCKGFFRRTIQKNLH-PTYSCKYDSCCVI 99
>X55074-2|CAB57886.1| 490|Homo sapiens thyroid hormone receptor
alpha 2 protein.
Length = 490
Score = 29.5 bits (63), Expect = 4.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 51 RCYSCVCCRKAFGV*VPSCLHRPSCRCVYFTCCVL 155
RC +C C+ F + LH P+ C Y +CCV+
Sbjct: 66 RCITCEGCKGFFRRTIQKNLH-PTYSCKYDSCCVI 99
>X55074-1|CAA38899.1| 410|Homo sapiens thyroid hormone receptor
alpha 1 protein.
Length = 410
Score = 29.5 bits (63), Expect = 4.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 51 RCYSCVCCRKAFGV*VPSCLHRPSCRCVYFTCCVL 155
RC +C C+ F + LH P+ C Y +CCV+
Sbjct: 66 RCITCEGCKGFFRRTIQKNLH-PTYSCKYDSCCVI 99
>X55005-1|CAA38749.1| 410|Homo sapiens thyriod hormone receptor
alpha 1, THRA1 protein.
Length = 410
Score = 29.5 bits (63), Expect = 4.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 51 RCYSCVCCRKAFGV*VPSCLHRPSCRCVYFTCCVL 155
RC +C C+ F + LH P+ C Y +CCV+
Sbjct: 66 RCITCEGCKGFFRRTIQKNLH-PTYSCKYDSCCVI 99
>M24899-1|AAA35783.1| 490|Homo sapiens triiodothyronine receptor
protein.
Length = 490
Score = 29.5 bits (63), Expect = 4.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 51 RCYSCVCCRKAFGV*VPSCLHRPSCRCVYFTCCVL 155
RC +C C+ F + LH P+ C Y +CCV+
Sbjct: 66 RCITCEGCKGFFRRTIQKNLH-PTYSCKYDSCCVI 99
>M24748-2|AAA66021.1| 410|Homo sapiens thyroid receptor alpha-1
protein.
Length = 410
Score = 29.5 bits (63), Expect = 4.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 51 RCYSCVCCRKAFGV*VPSCLHRPSCRCVYFTCCVL 155
RC +C C+ F + LH P+ C Y +CCV+
Sbjct: 66 RCITCEGCKGFFRRTIQKNLH-PTYSCKYDSCCVI 99
>J03239-1|AAA61176.1| 490|Homo sapiens thyroid hormone receptor
protein.
Length = 490
Score = 29.5 bits (63), Expect = 4.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 51 RCYSCVCCRKAFGV*VPSCLHRPSCRCVYFTCCVL 155
RC +C C+ F + LH P+ C Y +CCV+
Sbjct: 66 RCITCEGCKGFFRRTIQKNLH-PTYSCKYDSCCVI 99
>CR541915-1|CAG46713.1| 410|Homo sapiens THRA protein.
Length = 410
Score = 29.5 bits (63), Expect = 4.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 51 RCYSCVCCRKAFGV*VPSCLHRPSCRCVYFTCCVL 155
RC +C C+ F + LH P+ C Y +CCV+
Sbjct: 66 RCITCEGCKGFFRRTIQKNLH-PTYSCKYDSCCVI 99
>BC035137-1|AAH35137.1| 451|Homo sapiens THRA protein protein.
Length = 451
Score = 29.5 bits (63), Expect = 4.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 51 RCYSCVCCRKAFGV*VPSCLHRPSCRCVYFTCCVL 155
RC +C C+ F + LH P+ C Y +CCV+
Sbjct: 66 RCITCEGCKGFFRRTIQKNLH-PTYSCKYDSCCVI 99
>BC008851-1|AAH08851.1| 410|Homo sapiens THRA protein protein.
Length = 410
Score = 29.5 bits (63), Expect = 4.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 51 RCYSCVCCRKAFGV*VPSCLHRPSCRCVYFTCCVL 155
RC +C C+ F + LH P+ C Y +CCV+
Sbjct: 66 RCITCEGCKGFFRRTIQKNLH-PTYSCKYDSCCVI 99
>BC002728-1|AAH02728.1| 490|Homo sapiens thyroid hormone receptor,
alpha (erythroblastic leukemia viral (v-erb-a) oncoge
protein.
Length = 490
Score = 29.5 bits (63), Expect = 4.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 51 RCYSCVCCRKAFGV*VPSCLHRPSCRCVYFTCCVL 155
RC +C C+ F + LH P+ C Y +CCV+
Sbjct: 66 RCITCEGCKGFFRRTIQKNLH-PTYSCKYDSCCVI 99
>BC000261-1|AAH00261.1| 490|Homo sapiens thyroid hormone receptor,
alpha (erythroblastic leukemia viral (v-erb-a) oncoge
protein.
Length = 490
Score = 29.5 bits (63), Expect = 4.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 51 RCYSCVCCRKAFGV*VPSCLHRPSCRCVYFTCCVL 155
RC +C C+ F + LH P+ C Y +CCV+
Sbjct: 66 RCITCEGCKGFFRRTIQKNLH-PTYSCKYDSCCVI 99
>AK128797-1|BAC87611.1| 201|Homo sapiens protein ( Homo sapiens
cDNA FLJ45585 fis, clone BRTHA3013882. ).
Length = 201
Score = 29.5 bits (63), Expect = 4.1
Identities = 18/46 (39%), Positives = 21/46 (45%)
Frame = +3
Query: 63 CVCCRKAFGV*VPSCLHRPSCRCVYFTCCVLCIFRLLTSWLFCLHL 200
CVC V + CLH C C F C LC+ L + CLHL
Sbjct: 70 CVCLCVCVSVCLCVCLHLCVCVC-GFVCLCLCVCVCLCVCV-CLHL 113
>AB209346-1|BAD92583.1| 397|Homo sapiens thyroid hormone receptor,
alpha isoform 1 variant protein.
Length = 397
Score = 29.5 bits (63), Expect = 4.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 51 RCYSCVCCRKAFGV*VPSCLHRPSCRCVYFTCCVL 155
RC +C C+ F + LH P+ C Y +CCV+
Sbjct: 53 RCITCEGCKGFFRRTIQKNLH-PTYSCKYDSCCVI 86
>BC117184-1|AAI17185.1| 1388|Homo sapiens retrotransposon gag domain
containing 1 protein.
Length = 1388
Score = 28.7 bits (61), Expect = 7.2
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -1
Query: 205 PSRCRQNSQEVSRRNMQSTQQVKYTQRQLGRCRQLGTH 92
P+ C++N++E + S QQ + Q RC L H
Sbjct: 1326 PTACKRNNEEAMGNELSSQQQTEEHQHVSKRCYYLKEH 1363
>BC113670-1|AAI13671.1| 1388|Homo sapiens retrotransposon gag domain
containing 1 protein.
Length = 1388
Score = 28.7 bits (61), Expect = 7.2
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -1
Query: 205 PSRCRQNSQEVSRRNMQSTQQVKYTQRQLGRCRQLGTH 92
P+ C++N++E + S QQ + Q RC L H
Sbjct: 1326 PTACKRNNEEAMGNELSSQQQTEEHQHVSKRCYYLKEH 1363
>AY121804-1|AAM82752.1| 1388|Homo sapiens BJ-HCC-23 tumor antigen
protein.
Length = 1388
Score = 28.7 bits (61), Expect = 7.2
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -1
Query: 205 PSRCRQNSQEVSRRNMQSTQQVKYTQRQLGRCRQLGTH 92
P+ C++N++E + S QQ + Q RC L H
Sbjct: 1326 PTACKRNNEEAMGNELSSQQQTEEHQHVSKRCYYLKEH 1363
>AM231187-1|CAJ77183.1| 542|Homo sapiens autogenous vein graft
remodeling associated protein 4 protein.
Length = 542
Score = 28.7 bits (61), Expect = 7.2
Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Frame = +3
Query: 3 WSYXSTLINMFKYLVVRCYSCVCCRKAFGV*VPSCLHRPSCRCV-YFTCCVLCIFRLLTS 179
+S I+ +K+ C C FGV + S + P+ Y C LC +
Sbjct: 361 YSQTFLCIHNYKHNTTLSTPCHLCYARFGV-LKSLMDHPTVHTNGYKHLCALCSMMFYYN 419
Query: 180 WLFCLHLL 203
FCLH L
Sbjct: 420 LCFCLHCL 427
>AK128416-1|BAC87430.1| 303|Homo sapiens protein ( Homo sapiens
cDNA FLJ46559 fis, clone THYMU3040126. ).
Length = 303
Score = 28.7 bits (61), Expect = 7.2
Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Frame = +3
Query: 3 WSYXSTLINMFKYLVVRCYSCVCCRKAFGV*VPSCLHRPSCRCVYFTCCVLCIF-RLLTS 179
++Y + + ++ + Y CVC V C++ R +TC +C++ R+ T
Sbjct: 180 YTYTCMCVCVHTHIYIHMYVCVCTHAYIHTHVYVCVY---TRIYTYTCMCVCVYTRIYTY 236
Query: 180 WLFCLHLLGPIH 215
C+ IH
Sbjct: 237 TYVCVCTHAYIH 248
>AB037739-1|BAA92556.1| 1418|Homo sapiens KIAA1318 protein protein.
Length = 1418
Score = 28.7 bits (61), Expect = 7.2
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -1
Query: 205 PSRCRQNSQEVSRRNMQSTQQVKYTQRQLGRCRQLGTH 92
P+ C++N++E + S QQ + Q RC L H
Sbjct: 1356 PTACKRNNEEAMGNELSSQQQTEEHQHVSKRCYYLKEH 1393
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,323,258
Number of Sequences: 237096
Number of extensions: 553259
Number of successful extensions: 1845
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1843
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2756025120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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