Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_L02
         (829 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    23   3.9  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    23   3.9  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   6.8  

>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -2

Query: 531 LPHVHQTRRSTTSPRVY 481
           LP     +RST SPRVY
Sbjct: 409 LPSPGSDQRSTPSPRVY 425


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -1

Query: 781 PPRASTARESPQFAMYICSGETKAH 707
           PP  +  +ESPQ   Y  +G    H
Sbjct: 233 PPTVNIKKESPQMQSYRPTGNITPH 257


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 25/100 (25%), Positives = 40/100 (40%)
 Frame = +3

Query: 519 GHAGARVSAHCAENLLECILQTEEFRREDIAEAIRTGFLDLDKKMSELPELSNGKEKSGS 698
           G A   +S   + ++   I+    F  ED+A+      L LD+K   L E+   K+    
Sbjct: 295 GTAIVSISTSVSTSVYLAIVFNGLFTEEDVADVPINVTLSLDEKKYILQEVVRVKKPHYE 354

Query: 699 TAVCAFVSPEQIYIANCGDSRAVLARGGIPIFATRXHKPE 818
             +    SP         D R +L RG + +  +   KPE
Sbjct: 355 LNMVEVRSP-----VTPADLR-LLTRGRLVLTVSSVSKPE 388


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,894
Number of Sequences: 336
Number of extensions: 3608
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22725411
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)