Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_L02
         (829 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomy...   113   2e-26
SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomy...   113   3e-26
SPCC4F11.02 |ptc1||protein phosphatase 2C Ptc1|Schizosaccharomyc...    64   2e-11
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    35   0.016
SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase...    32   0.11 
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch...    29   0.61 
SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi...    27   2.5  
SPAC9G1.12 |cpd1||tRNA |Schizosaccharomyces pombe|chr 1|||Manual       27   2.5  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    26   7.5  
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma...    26   7.5  
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc...    26   7.5  
SPBC1604.10 |srb7|med21|mediator complex subunit Srb7 |Schizosac...    25   9.9  
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces...    25   9.9  

>SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 414

 Score =  113 bits (273), Expect = 2e-26
 Identities = 58/161 (36%), Positives = 92/161 (57%), Gaps = 2/161 (1%)
 Frame = +3

Query: 339 MGAFLNKPETKKYNESGEGNGLRYGVASMQGWRVEMEDAHHAQLTL--NGTLSDWSYFAV 512
           MG  L++P T+K++ +G    + YG++SMQGWR+ MEDAH A L++  +       +FAV
Sbjct: 1   MGQTLSEPVTEKHSVNGSNEFVLYGLSSMQGWRISMEDAHSAILSMECSAVKDPVDFFAV 60

Query: 513 FDGHAGARVSAHCAENLLECILQTEEFRREDIAEAIRTGFLDLDKKMSELPELSNGKEKS 692
           +DGH G +V+  C  NL + + +  +F++ D   A+++ FL+ DK + +  +     + S
Sbjct: 61  YDGHGGDKVAKWCGSNLPQILEKNPDFQKGDFVNALKSSFLNADKAILDDDQFHT--DPS 118

Query: 693 GSTAVCAFVSPEQIYIANCGDSRAVLARGGIPIFATRXHKP 815
           G TA        ++Y AN GDSR VL   GI    +  HKP
Sbjct: 119 GCTATVVLRVGNKLYCANAGDSRTVLGSKGIAKPLSADHKP 159


>SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 370

 Score =  113 bits (272), Expect = 3e-26
 Identities = 64/163 (39%), Positives = 91/163 (55%), Gaps = 4/163 (2%)
 Frame = +3

Query: 339 MGAFLNKPETKKYNESGEGNGLRYGVASMQGWRVEMEDAHHAQLTL---NGTLSDWSYFA 509
           MG  L++P   K++ SG    L +GV+ MQGWR+ MEDAH A L     N +    S+F 
Sbjct: 1   MGQTLSEPVLDKHSSSGGDRWLHFGVSHMQGWRISMEDAHCALLNFTDSNSSNPPTSFFG 60

Query: 510 VFDGHAGARVSAHCAENLLECILQTEEFRREDIAEAIRTGFLDLDKKMSELPELSNGKEK 689
           VFDGH G RV+ +C ++L + I     F + +  EA+++GFL  D  + +  ++   ++ 
Sbjct: 61  VFDGHGGDRVAKYCRQHLPDIIKSQPSFWKGNYDEALKSGFLAADNALMQDRDMQ--EDP 118

Query: 690 SGSTAVCAFVSPEQ-IYIANCGDSRAVLARGGIPIFATRXHKP 815
           SG TA  A +   Q IY AN GDSR VL R G     +  HKP
Sbjct: 119 SGCTATTALIVDHQVIYCANAGDSRTVLGRKGTAEPLSFDHKP 161


>SPCC4F11.02 |ptc1||protein phosphatase 2C Ptc1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 347

 Score = 64.1 bits (149), Expect = 2e-11
 Identities = 45/138 (32%), Positives = 69/138 (50%), Gaps = 9/138 (6%)
 Frame = +3

Query: 426 QGWRVEMEDAHHAQLTLNGTLSDWSYFAVFDGHAGARVSAHCAENLLECILQTEEFRRED 605
           Q WR  MED H       G   D  + AV+DGHAG + S +C +NL + +L  E+ R E 
Sbjct: 80  QRWRRSMEDTHICLYDFGGNQDD-GFVAVYDGHAGIQASDYCQKNLHKVLL--EKVRNEP 136

Query: 606 ---IAEAIRTGFLDLDKKMSELPELSNGKEKSGSTAVCAFVSPEQ------IYIANCGDS 758
              + + +   F++++ K+++    +   +  G TA  AF   E+      +Y AN GD+
Sbjct: 137 DRLVTDLMDETFVEVNSKIAK----ATHNDICGCTAAVAFFRYEKNRTRRVLYTANAGDA 192

Query: 759 RAVLARGGIPIFATRXHK 812
           R VL R G  I  +  HK
Sbjct: 193 RIVLCRDGKAIRLSYDHK 210


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1692

 Score = 34.7 bits (76), Expect = 0.016
 Identities = 32/112 (28%), Positives = 46/112 (41%), Gaps = 8/112 (7%)
 Frame = +3

Query: 384  SGEGNGLRYGVASMQGWRVEMEDAHHAQLTLNGTLSDWS-YFAVFDGHAGA----RVSAH 548
            S + N LRYGV       + +  A   +L +N  L   S  + V D    A    RV   
Sbjct: 988  SPQPNILRYGVCGYLSRSIPVISA--CELVVNNFLHPQSSLYCVLDSDISAGKNNRVLKF 1045

Query: 549  CAENLLECI---LQTEEFRREDIAEAIRTGFLDLDKKMSELPELSNGKEKSG 695
              +NL  C+   +   +   E I  A+R GFL L+KK+  +      K   G
Sbjct: 1046 VYDNLASCLAHEINAADSSSEQICNALRRGFLRLNKKLGNVIHYDLRKSSEG 1097


>SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 444

 Score = 31.9 bits (69), Expect = 0.11
 Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = +3

Query: 447 EDAHHAQLTLNGTLSDWSYFAVFDGHAGARVSAHCAENLLECIL-QTEEFRREDIAEAIR 623
           ED H   +  N    +W ++ +FDGH+G   S    ++L+  ++ + ++       +   
Sbjct: 98  EDDHVEVIDRNIDEGNWYFWGIFDGHSGWNTSLFLRQHLVPAVVRELQKCTASYYHQNAC 157

Query: 624 TGFLDLDKKMSE 659
              L LDK +SE
Sbjct: 158 PSSLALDKSISE 169


>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 783

 Score = 29.5 bits (63), Expect = 0.61
 Identities = 21/73 (28%), Positives = 33/73 (45%)
 Frame = +3

Query: 528 GARVSAHCAENLLECILQTEEFRREDIAEAIRTGFLDLDKKMSELPELSNGKEKSGSTAV 707
           GA     CA N LEC    ++ +  D +   +  F+DL K+   L  +    E+  ST V
Sbjct: 52  GANPCKACASNNLECTYPVKDEKEMDYS---KDYFIDLSKRYKCLEYI---VERLCSTKV 105

Query: 708 CAFVSPEQIYIAN 746
             + +P  I + N
Sbjct: 106 STYTTPSLIEVCN 118


>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 680

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
 Frame = +3

Query: 360 PETKKYNESGEGNGLRYGVASMQGWRVEMEDAH-HAQL--TLNGTLSDWSYFAVFD 518
           PE + YN +GE     YG AS   +    +  H  +Q    ++ ++ DW Y  +F+
Sbjct: 230 PEIQDYNFAGENGMGVYGAASAYTYSDAYQALHTRSQYLREMSNSIEDWDYELMFE 285


>SPAC9G1.12 |cpd1||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 364

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = +3

Query: 630 FLDLDKKMSELPELSNGKEKSGSTAVCAFVSP--EQI 734
           FLDL      +P LSN      ST +C F SP  EQI
Sbjct: 184 FLDLPAPWEAIPHLSNHVNHDKSTRICCF-SPCIEQI 219


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
 Frame = -2

Query: 639  NPGNQYGL---LQLCLHAETPPSAEYIQEDFLHSVRR 538
            N G++ G+   L+  +++ TP   E   +DF+++VRR
Sbjct: 1957 NSGDRIGVCIALEELINSATPEQLEIYSDDFVYAVRR 1993


>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 630

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 459 HAQLTLNGTLSDWSYFAVFD 518
           H  +T NG L+ WS   +FD
Sbjct: 357 HGYVTYNGWLAQWSMITLFD 376


>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 663 PELSNGKEKSGSTAVCAFVSPEQIYIAN 746
           PEL+  K   G T VC     E+IY A+
Sbjct: 333 PELTTSKRDFGVTNVCTSPDGERIYAAS 360


>SPBC1604.10 |srb7|med21|mediator complex subunit Srb7
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 138

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 9/29 (31%), Positives = 20/29 (68%)
 Frame = +3

Query: 588 EFRREDIAEAIRTGFLDLDKKMSELPELS 674
           +F + D+A+ + T F+ +D  +++LP +S
Sbjct: 55  QFAQRDLAKDLVTKFMQIDTLINQLPGIS 83


>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 693

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 546 HCAENLLECILQTEEFRREDIAEAIRTGFLDLDKK 650
           H  E L++CIL+ EE+ +      I   FLD+ K+
Sbjct: 74  HSEEKLVDCILKDEEYDKR--YPGIHIVFLDMVKE 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,123,193
Number of Sequences: 5004
Number of extensions: 60307
Number of successful extensions: 163
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)