Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_K21
         (789 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14C8.08c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       34   0.020
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt...    29   0.76 
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos...    29   0.76 
SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac...    28   1.8  
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    26   5.4  
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    26   7.1  
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||...    25   9.4  
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy...    25   9.4  

>SPBC14C8.08c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 34.3 bits (75), Expect = 0.020
 Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
 Frame = +1

Query: 331 VKAMPKKRKGANLSRRTIHARAMHDIRARRSSEQIQENNADSRVRMSQLRKSRLQE--AR 504
           ++ +  K K  NL R+T++   +H++     S +I +    SR  M    +S LQE   +
Sbjct: 61  IRQITAKDKTVNLLRKTLNRPLLHEVDYHGKSLEILDMLLQSRNSMISSLRSELQEKNQK 120

Query: 505 DERNQQRQLEPSNGINRDSGVNGDKPAEDVQSTCSTES 618
           D++ +  +LE      ++  VN   P+    S  S E+
Sbjct: 121 DKKKEVNKLEEKMTNAKEPNVN--VPSMKASSAISVET 156


>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
           subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 29.1 bits (62), Expect = 0.76
 Identities = 18/72 (25%), Positives = 33/72 (45%)
 Frame = +1

Query: 343 PKKRKGANLSRRTIHARAMHDIRARRSSEQIQENNADSRVRMSQLRKSRLQEARDERNQQ 522
           P     +  S ++ H R   D R    SE  +  +A   +R   +RK R+ +  D   Q+
Sbjct: 125 PLPESASRSSSQSSHQRHSRDGRGELGSEHGERRSAMDGLRDRHIRKVRVSQLLD--LQR 182

Query: 523 RQLEPSNGINRD 558
           R++ P++   +D
Sbjct: 183 RRIRPADHTTKD 194


>SPAC694.06c |mrc1||mediator of replication checkpoint 1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1019

 Score = 29.1 bits (62), Expect = 0.76
 Identities = 17/44 (38%), Positives = 27/44 (61%)
 Frame = +1

Query: 490 LQEARDERNQQRQLEPSNGINRDSGVNGDKPAEDVQSTCSTEST 621
           L+ AR++  + RQLE ++G   D G   D+  E+V S+ +T ST
Sbjct: 454 LERARNDAEKIRQLEKASGNASDEGELNDE--EEVISSSNTPST 495


>SPCC1393.02c |||non-specific DNA binding protein Spt2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 406

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 15/34 (44%), Positives = 27/34 (79%), Gaps = 4/34 (11%)
 Frame = +1

Query: 445 NADSRVRMSQLRKSRLQE-ARD---ERNQQRQLE 534
           +A + V++ QLRK++++E AR+   ERN+QR+L+
Sbjct: 18  SAQAAVQIEQLRKAQIREKAREITEERNRQRKLQ 51


>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 697

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 430 QIQENNADSRVRMSQLRKSRLQEARDERNQQR 525
           QI+ENN   RV + +LRK  +  A   R   R
Sbjct: 634 QIRENNGYKRVLLDRLRKKAILRAFPSRTLNR 665


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1328

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
 Frame = +1

Query: 310 KYTYFIIVKAMPKKRKGANLSRRTIHARAMHD--IRARRSSEQIQENNADS 456
           K  Y  +    P+ +     SRR   A+  HD  ++A R+ E   E   DS
Sbjct: 79  KLLYMAVDGCAPRAKMNQQRSRRFRTAKDAHDARLKAERNGEDFPEEQFDS 129


>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 380

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = +1

Query: 442 NNADSRVRMSQLRKSRLQEARDERNQQRQLEPSNGINRDSGVNGDKPAEDVQ 597
           +NA  +     LRK   ++ R E  + RQ E      RDS +N D  A+ VQ
Sbjct: 310 DNAKFKEEEENLRKRFTEQVRVEETRFRQWEQRLIAERDS-LNKDLEAQHVQ 360


>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/51 (23%), Positives = 24/51 (47%)
 Frame = +1

Query: 421 SSEQIQENNADSRVRMSQLRKSRLQEARDERNQQRQLEPSNGINRDSGVNG 573
           ++E++++NNA+S        +  ++   D +      +PS     D G NG
Sbjct: 499 TNEEVEKNNANSENANGLTDEKIIEAPLDTKENSDDDKPSPAAAEDIGTNG 549


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,793,073
Number of Sequences: 5004
Number of extensions: 51445
Number of successful extensions: 129
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)